PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_12661A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 23066.3 Da PI: 7.061 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.7 | 6.9e-37 | 32 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrr+C+++Cv+ap+f +++++fa+vhk+FGasnv k+l+++p r+d++ +++yeA+ar+ dPvyG+vg Oropetium_20150105_12661A 32 PCGACKFLRRRCVPGCVFAPHFgagsggGGASAAQFAAVHKVFGASNVAKMLSRVPAALRRDVAGTVCYEAQARIADPVYGCVG 115 7*********************55444433667*************************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +il+lq+q++ ++ael+++++e Oropetium_20150105_12661A 116 TILALQHQVALVQAELSTVQTE 137 ******************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.224 | 31 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-40 | 32 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSRAIQPPGK LAGAEPAADA QPEEGPAGPG APCGACKFLR RRCVPGCVFA PHFGAGSGGG 60 GASAAQFAAV HKVFGASNVA KMLSRVPAAL RRDVAGTVCY EAQARIADPV YGCVGTILAL 120 QHQVALVQAE LSTVQTELLN RRLALATVLP SLHAASSPTS QMVNNCGALP PQTVDYIDID 180 PSLRGLPHPL LPSQHERRLE EEEGRSQIMV ESWENRNSCD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 28 | 139 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 28 | 139 | 7 | 112 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_12661A |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086412 | 1e-108 | BT086412.1 Zea mays full-length cDNA clone ZM_BFc0163O13 mRNA, complete cds. | |||
GenBank | KJ727726 | 1e-108 | KJ727726.1 Zea mays clone pUT5666 LOB transcription factor (LOB11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815329.1 | 2e-77 | LOB domain-containing protein 20-like | ||||
Swissprot | Q9SRV3 | 2e-49 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A2S3HRB5 | 6e-76 | A0A2S3HRB5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DG51 | 5e-76 | A0A2T7DG51_9POAL; Uncharacterized protein | ||||
STRING | Si004290m | 3e-76 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14085 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-39 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_12661A |