PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12592A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CPP
Protein Properties Length: 607aa    MW: 66273.3 Da    PI: 8.6936
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12592AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR413.7e-13154193242
                        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                                +kk CnC++s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  Oropetium_20150105_12592A 154 KKKCCNCRNSRCLKLYCECFASGSYCDG-CNCTNCFNNPEN 193
                                799*************************.********9875 PP
2TCR50.93.2e-16237276140
                        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Oropetium_20150105_12592A 237 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 276
                                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-14153193IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.655154277IPR005172CRC domain
PfamPF036382.9E-9155190IPR005172CRC domain
SMARTSM011148.4E-20237278IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12240275IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MAGKEPGGAG PPQRPPMPAV STQPPIKKLV RQLDFNSAAM AGNPAMAAAA AAAVSRAMQP  60
RPVHVGFPHQ QHTRAAVPLG MPQQLHHRGL PVLRPHQVAG HVPLPRMAVA VSVPQLRPTL  120
VQPVPRPSVA VPLKPESPKQ RTKLYEGKDG TPTKKKCCNC RNSRCLKLYC ECFASGSYCD  180
GCNCTNCFNN PENEVARREA IDATLERNPD AFRPKIGNSP HTARNNEASG DLPLVGKHNK  240
GCHCKKSGCL KKYCECFQAN ILCSENCKCM DCKNFEGSEE RKALFQGDQK NAIHMQQAAN  300
AAVNGAIGVA GFPSPFSSRK RKHIDPSLDR SNREHIANKN CHLAQKNAMP DSSVPVSQSV  360
HPPTLGPFKV TYRPLLADIV QPDDIKELCK LLVMVSGEAA KAYTDQKTQE EKAAKKEDET  420
AGPGTSTNHD REEINLNTDQ KSLINDTSSR RTHMDKALQE EYRSNCAEDQ KSNRPMSPGT  480
LALMCDEEQD TMFTTSQTAI SQEPVAANQN RSELYAEQER CVLTEFRDCL RKLVTCGRMK  540
EERYSMAMKP EASGHLGQVN GVSRVPYSKV DVPAVVKTFP QSSSSHPIAG NPVTGHSEKQ  600
LKPDNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-3015828614132Protein lin-54 homolog
5fd3_B9e-3015828614132Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12592A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815944.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T8IK130.0A0A2T8IK13_9POAL; Uncharacterized protein
STRINGPavir.Eb03237.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-106Tesmin/TSO1-like CXC domain-containing protein