PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_12589A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 570aa MW: 62074.1 Da PI: 6.2813 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.7 | 6.1e-16 | 1 | 39 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +F+++++p+ ++r++L+k+lgL+ rqVk+WFqNrR++ k Oropetium_20150105_12589A 1 MFKESPHPDDTQRQQLSKQLGLSARQVKFWFQNRRTQIK 39 69*********************************9877 PP | |||||||
2 | START | 145.5 | 4.9e-46 | 164 | 399 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWd 73 la a++el ++ +++ep+Wv+s+ + +n+de+l+ f +++ +ea+r++g+v ++++lv+ ++d++ qW+ Oropetium_20150105_12589A 164 LAGHAMEELTAMCSSGEPLWVRSVetgrDVLNYDEYLRLFRRDEDsrgdrlagWLVEASRETGLVYLDATRLVQAFMDVN-QWT 246 78899**********************************988777899***999**************************.*** PP TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE- CS START 74 etla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRa 145 e ++ ka+tl vi+ g ga+qlm+ae q+l+p+vp R+f f+Ry+++ +a++w+ vdvS d + ss vR Oropetium_20150105_12589A 247 ELFPsivsKASTLSVIQAGenggqdGAVQLMFAEVQMLTPVVPaREFRFLRYCKKITAEKWATVDVSFDDVVVRHDdASSTVRN 330 *******************************************************************99887777779999998 PP E..ESSEEEEEEEECTCEEEEEEEE-EE--SS......XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 146 e..llpSgiliepksnghskvtwvehvdlkgr......lphwllrslvksglaegaktwvatlqrqcek 206 + + pSg+++e+ g++kv wveh+ ++ + ++++++r sgla+ a++wva+lq qce+ Oropetium_20150105_12589A 331 RwlKKPSGCIVEEQTSGRCKVAWVEHTTCRTSnnnaavTVPSVYRASAASGLAFRARRWVAALQVQCER 399 74467**********************99876333333569**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 2.4E-13 | 1 | 39 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.289 | 1 | 41 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-4 | 1 | 45 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-14 | 1 | 49 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.1E-13 | 1 | 49 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.18E-13 | 2 | 42 | No hit | No description |
PRINTS | PR00031 | 1.0E-4 | 12 | 21 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 16 | 39 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-4 | 21 | 37 | IPR000047 | Helix-turn-helix motif |
PROSITE profile | PS50848 | 33.719 | 154 | 402 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.75E-22 | 158 | 399 | No hit | No description |
CDD | cd08875 | 6.99E-88 | 158 | 398 | No hit | No description |
SMART | SM00234 | 6.5E-39 | 163 | 399 | IPR002913 | START domain |
Pfam | PF01852 | 4.5E-36 | 164 | 399 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MFKESPHPDD TQRQQLSKQL GLSARQVKFW FQNRRTQIKA SQERQENSLL KSEVEKLQQE 60 NRAMRELVKR SSRCSSCGGG VPSSSTSTAT TQDQLLRLVN AKLKAEVERL RGALGTPAAE 120 AVPSPTSPSC AIQISNSRPS SSLDDYDIDG FLLGHDAKAR ILELAGHAME ELTAMCSSGE 180 PLWVRSVETG RDVLNYDEYL RLFRRDEDSR GDRLAGWLVE ASRETGLVYL DATRLVQAFM 240 DVNQWTELFP SIVSKASTLS VIQAGENGGQ DGAVQLMFAE VQMLTPVVPA REFRFLRYCK 300 KITAEKWATV DVSFDDVVVR HDDASSTVRN RWLKKPSGCI VEEQTSGRCK VAWVEHTTCR 360 TSNNNAAVTV PSVYRASAAS GLAFRARRWV AALQVQCERM VFSVATNVPT RDSREWNQTF 420 RSLTLLVCFL SFLTSSLSQS QDEDDGGGKW ILQDSCTGPC ESVLAFAPVD AATVRPVIEG 480 HDSSDVPVLP CGFAVAPDGL DSRPAVITAT KDDGNRTTPP GALVTVAFQV LGASPPAGDA 540 PTVNSVATAT GLVACTLGNI KKALRCEDC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_12589A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701492.1 | 0.0 | homeobox-leucine zipper protein ROC9 | ||||
Swissprot | Q5JMF3 | 1e-164 | ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9 | ||||
TrEMBL | A0A1E5VBC3 | 0.0 | A0A1E5VBC3_9POAL; Homeobox-leucine zipper protein ROC9 | ||||
STRING | Si004904m | 1e-179 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP799 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 1e-119 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_12589A |