PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12589A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 570aa    MW: 62074.1 Da    PI: 6.2813
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12589AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.76.1e-161391856
                               HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               +F+++++p+ ++r++L+k+lgL+ rqVk+WFqNrR++ k
  Oropetium_20150105_12589A  1 MFKESPHPDDTQRQQLSKQLGLSARQVKFWFQNRRTQIK 39
                               69*********************************9877 PP

2START145.54.9e-461643992206
                                HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
                      START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWd 73 
                                la  a++el ++ +++ep+Wv+s+    + +n+de+l+ f +++           +ea+r++g+v  ++++lv+ ++d++ qW+
  Oropetium_20150105_12589A 164 LAGHAMEELTAMCSSGEPLWVRSVetgrDVLNYDEYLRLFRRDEDsrgdrlagWLVEASRETGLVYLDATRLVQAFMDVN-QWT 246
                                78899**********************************988777899***999**************************.*** PP

                                TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE- CS
                      START  74 etla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRa 145
                                e ++    ka+tl vi+ g      ga+qlm+ae q+l+p+vp R+f f+Ry+++ +a++w+ vdvS d    +    ss vR 
  Oropetium_20150105_12589A 247 ELFPsivsKASTLSVIQAGenggqdGAVQLMFAEVQMLTPVVPaREFRFLRYCKKITAEKWATVDVSFDDVVVRHDdASSTVRN 330
                                *******************************************************************99887777779999998 PP

                                E..ESSEEEEEEEECTCEEEEEEEE-EE--SS......XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                      START 146 e..llpSgiliepksnghskvtwvehvdlkgr......lphwllrslvksglaegaktwvatlqrqcek 206
                                +  + pSg+++e+   g++kv wveh+ ++ +      ++++++r    sgla+ a++wva+lq qce+
  Oropetium_20150105_12589A 331 RwlKKPSGCIVEEQTSGRCKVAWVEHTTCRTSnnnaavTVPSVYRASAASGLAFRARRWVAALQVQCER 399
                                74467**********************99876333333569**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000462.4E-13139IPR001356Homeobox domain
PROSITE profilePS5007115.289141IPR001356Homeobox domain
SMARTSM003892.8E-4145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-14149IPR009057Homeodomain-like
SuperFamilySSF466897.1E-13149IPR009057Homeodomain-like
CDDcd000864.18E-13242No hitNo description
PRINTSPR000311.0E-41221IPR000047Helix-turn-helix motif
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
PRINTSPR000311.0E-42137IPR000047Helix-turn-helix motif
PROSITE profilePS5084833.719154402IPR002913START domain
SuperFamilySSF559619.75E-22158399No hitNo description
CDDcd088756.99E-88158398No hitNo description
SMARTSM002346.5E-39163399IPR002913START domain
PfamPF018524.5E-36164399IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MFKESPHPDD TQRQQLSKQL GLSARQVKFW FQNRRTQIKA SQERQENSLL KSEVEKLQQE  60
NRAMRELVKR SSRCSSCGGG VPSSSTSTAT TQDQLLRLVN AKLKAEVERL RGALGTPAAE  120
AVPSPTSPSC AIQISNSRPS SSLDDYDIDG FLLGHDAKAR ILELAGHAME ELTAMCSSGE  180
PLWVRSVETG RDVLNYDEYL RLFRRDEDSR GDRLAGWLVE ASRETGLVYL DATRLVQAFM  240
DVNQWTELFP SIVSKASTLS VIQAGENGGQ DGAVQLMFAE VQMLTPVVPA REFRFLRYCK  300
KITAEKWATV DVSFDDVVVR HDDASSTVRN RWLKKPSGCI VEEQTSGRCK VAWVEHTTCR  360
TSNNNAAVTV PSVYRASAAS GLAFRARRWV AALQVQCERM VFSVATNVPT RDSREWNQTF  420
RSLTLLVCFL SFLTSSLSQS QDEDDGGGKW ILQDSCTGPC ESVLAFAPVD AATVRPVIEG  480
HDSSDVPVLP CGFAVAPDGL DSRPAVITAT KDDGNRTTPP GALVTVAFQV LGASPPAGDA  540
PTVNSVATAT GLVACTLGNI KKALRCEDC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12589A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701492.10.0homeobox-leucine zipper protein ROC9
SwissprotQ5JMF31e-164ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A1E5VBC30.0A0A1E5VBC3_9POAL; Homeobox-leucine zipper protein ROC9
STRINGSi004904m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.11e-119HD-ZIP family protein