PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12488A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HB-other
Protein Properties Length: 2298aa    MW: 252311 Da    PI: 7.245
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12488AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-09616662753
                                --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                   Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                f +   + L++ Fe+++yps++++e LA++lgLt  qV  WF   R 
  Oropetium_20150105_12488A 616 FAPIVRQKLKDQFENDSYPSRATKESLARELGLTFIQVDKWFASTRH 662
                                55666899**********************************88776 PP
2Homeobox34.73.1e-11820867552
                                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                   Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                                 +f +   + L+ +Fek++yp++++++ LA++lgLt  qV+ WF   R
  Oropetium_20150105_12488A 820 NRFGPVVSQKLKGHFEKDPYPNRSTIQNLAQELGLTSIQVRKWFSSTR 867
                                5577778899**********************************8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.9E-9609671IPR001356Homeobox domain
CDDcd000861.92E-9614665No hitNo description
SuperFamilySSF466892.01E-9614668IPR009057Homeodomain-like
PfamPF000465.9E-7616662IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-9617665IPR009057Homeodomain-like
PROSITE profilePS5007112.115624667IPR001356Homeobox domain
SuperFamilySSF466892.95E-10809867IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-10811867IPR009057Homeodomain-like
PROSITE profilePS5007112.94813873IPR001356Homeobox domain
SMARTSM003893.7E-9814877IPR001356Homeobox domain
CDDcd000863.43E-10816867No hitNo description
PfamPF000468.9E-9819867IPR001356Homeobox domain
SMARTSM000535.9E-812981533IPR001401Dynamin, GTPase domain
SuperFamilySSF525403.86E-3713011614IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.4E-5313031614IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5171869.64313191606IPR030381Dynamin-type guanine nucleotide-binding (G) domain
CDDcd087711.82E-6013201606No hitNo description
PRINTSPR001951.1E-1013221340IPR022812Dynamin superfamily
PfamPF003505.2E-3213251505IPR022812Dynamin superfamily
PRINTSPR001951.1E-1013471364IPR022812Dynamin superfamily
PRINTSPR001951.1E-1014251442IPR022812Dynamin superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000911Biological Processcytokinesis by cell plate formation
GO:0009504Cellular Componentcell plate
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 2298 aa     Download sequence    Send to blast
MAYGRGTDWN LLFLRSATNK SNTTSSEPLN DSAPAQPSLR KRKSGSSSGS PSNTVRVLRS  60
ASKNKVDLCS KSLNDSTPGE LDANKRKGIR PSKATSPISS VRVLRSASKN KDEVCSETLK  120
CSTAGEQVAN ERKLVTPSKV ESPNNSVRVL RSASKNKNEA YSEPLNDNTI AQPSAKKRKS  180
GSPLKVGSPA SSARVLRSNS KRANETFNVP QHDIPATQQA SRKGKSDTAP KGGSLKPVGR  240
VLPSASEKKD AYVEPLRDGF VLALPSTHHV KQQPLNVSTP VQPVVKRIKS GGSSKECSHK  300
KEDYLKIRQR VRYVLNRMNY EQSLIQAYAG EGWKGQSLEK IRPEKELERA KAEILRCKIK  360
IREAFQNMES LISEGKLEES LFDSAGQIFS EDRVFPEAAS LANGSKQHDA SDLPLDDSED  420
NCYNPGLDKM HIVKGGRSSA DNDGNEDDDF DPAGPDSSEH QKAESHYSES DFTSDSDDFC  480
AEIAKSCGQG AVSPLSNVNE EFQNRLFMET ELDQDVVLPV CSRRQVERLD YKKLYDEAYG  540
EESSSSSDDE EWSGKEKLED SETDGSVRPA KRHSRRASIE HPNSQYTQSE RQYGSVSEQQ  600
AEIHRSNGSN GSARHFAPIV RQKLKDQFEN DSYPSRATKE SLARELGLTF IQVDKWFAST  660
RHSSRIAAAK KGNLTENHTT GNDGTAVEST EVNDEVLVEL TADRNGMTHE EMMVQNNPNE  720
GNKKDILLSR AETKTDAYTT EASSDDKEWS GTSISQKELE DAETDSHAAS NHAKRLTRRA  780
LVEPHNNKHT PLSEQLHVSV NDQQTEAPYF NGSSSKARKN RFGPVVSQKL KGHFEKDPYP  840
NRSTIQNLAQ ELGLTSIQVR KWFSSTRHYS SVSAAKKGKG PGSHTNEKND STTLDSKREK  900
KSDNRAMENL TKDRNDSLSR KLMLQINLNE GNNDDIDNMF SQHPSCEEAL VTTPTAISIE  960
VGPPGYMPGE NQGKGAVWST GFEQGLTTTP TPVSSEVGPQ GYGYGTGENQ GYSGSWNIIS  1020
DSEHGILMTP TVTTMPIPRE VGATGYGPGE SQGNNASWNT SSEHRLFMTP STSSREACPP  1080
GYGPGEGQVN SASWNTCSDQ LVDVAPSTIS RQVSQLGYGP RENQVSGASW NTSTGQRSVM  1140
TPSTIPRVDP PGYWPGKNQG NSASWNNRRE QSFFMTPTTT LSEVGPPGYG PGENKGNGAS  1200
ANVGSPNDRP SEKQELADEA RKKAIALSFS FPFFLPRISN SNLFVSKCGG SHPMTANALM  1260
SPASGRTPNH KTAPPPSPST RRAAADAATA AAAAAAVESK TRFEAYNRLQ AAAVAFGEKL  1320
QIPEIVAIGG QSDGKSSLLE ALLGFRFNVR EVEMGTRRPL VLQMVHDPTA LEPRCRFQEE  1380
DSEEYGSPMV AGTAIAELIK QRTESHLRKI QAAVSSKPIV MRAEYAHCPN LTIIDTPGFV  1440
LKAKRGEPES TPDEIKSMVK ALASPPHRLI LFLQQSSVEW CSSIWLDTIR EIDPTFRRTM  1500
IVVSKFDNRL KEFGERWEVD TFLSASGYLG DNVHPFFVAL PKDRGTIPNE EFRRQICQVD  1560
IDVLRHLRDN VKGGFNEEKY GPYIGFSCLR KYLESELQRR YKEAAPATLA LLEQRCSEVS  1620
MDLARLDSKL QATSDVSQLR RSAMLHAASI CTHLRALLDG AADPAPEIWG KTTEEEQIHS  1680
GIGSWPGISM PVKPANYTLK LYGGAAFERV MSEFRCATYS MECPQVSREK VANILLAHAG  1740
RGGSSGLTEA AAEIARAAAR SWLAPLIDTA CDRLAFVLQS LFDLAMERNR NNQNVEDMDG  1800
YVGFLASLRC SYYKFVKELS NQCKQIVRHH LDSVTSPYSH ICYENDLLTG IGSVANSINR  1860
FNLPGVTSFD LSDSGSALEE AQENVPPKDQ QHMTPPNKVN ESKEILRESQ LTVPETPSPD  1920
LPADIHVGKK KDNGVPNDVG PRKRHARMAT YTNRNHHNNS IIGADDMGSR SGYSTICAIS  1980
AQYFAKMREV LIERNVPSAL NSGFLTPCRE RLFLALGFEL FAVNDEKFMD MFVAPGIVIF  2040
CRAVSDLALL STLFVLDSVS GLRIVFMSPT LRYNSRTQLA DSGLECHSGH LVKWPHMLSP  2100
GSSQRDAFSL SFTVGLLCCE SMDGGVSYSA MSTAHEIQLS ASPSSDRPPL GPAPAKVPRA  2160
GQSEGGWIER RRSRLNRSRC WISRGFGKQA PDPDEAPRDR SRVSTCVVRG RSAALQDATT  2220
TIRLGFEDLE EQVAHPTTLS PPAYRACVLC AQIFGGSSER SEFEPTRDST YYVAGLSSSR  2280
SLFPHPKWEN WKMCSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3w6n_A6e-20130515079220Dynamin-1-like protein
3w6n_B6e-20130515079220Dynamin-1-like protein
3w6o_A6e-20130515079220Dynamin-1-like protein
3w6o_B6e-20130515079220Dynamin-1-like protein
3w6p_A6e-20130515079220Dynamin-1-like protein
3w6p_B6e-20130515079220Dynamin-1-like protein
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12488A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP535722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-31Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain