PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12403A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 312aa    MW: 32190.8 Da    PI: 4.8383
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12403AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-3086144259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D+++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+edp+ v++tY+ eHnh+
  Oropetium_20150105_12403A  86 TDEWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSREDPDKVTVTYSFEHNHS 144
                                69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.27480146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-3082144IPR003657WRKY domain
SuperFamilySSF1182903.79E-2583144IPR003657WRKY domain
SMARTSM007742.5E-3585145IPR003657WRKY domain
PfamPF031064.4E-2687143IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDGEWSDGGA PASSPTASGG ERKAGAGDGV SADCPESPPA SPVAPMAAAP AASGRRRSAN  60
KRVVTLPLAD VSGPRPKGVG EGNTSTDEWA WRKYGQKPIK GSPFPRAYYR CSSSKGCPAR  120
KQVERSREDP DKVTVTYSFE HNHSAAVPRV QNRLAPKPRS QPVLPRPEPP APESVSVVST  180
HDVVSTTCAL ATEGGAGVEV HDDFRWLYDG VSVTSSTSPS DADAADDMLF SLPMFFGGGA  240
VVGAPPAPQL PDEFGDVGAL FGLEAADDDA MFAGLGELPE CAMVFRRHAG DGLAMAGGVK  300
VEQPGEGTAM T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-1758143376Disease resistance protein RRS1
5w3x_D7e-1758143376Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12403A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9737059e-96EU973705.1 Zea mays clone 407083 WRKY14 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624912.11e-115probable WRKY transcription factor 65
TrEMBLA0A0E0JNK81e-118A0A0E0JNK8_ORYPU; Uncharacterized protein
TrEMBLA0A3L6SUP71e-119A0A3L6SUP7_PANMI; Putative WRKY transcription factor 65
STRINGOPUNC01G29620.11e-119(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.26e-35WRKY DNA-binding protein 69