PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12373A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 178aa    MW: 20533.4 Da    PI: 6.364
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12373AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.67.7e-24958150
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               krien ++rq tf kRr g++KKA ELSvLCd++ ++++fs +gkly y 
  Oropetium_20150105_12373A  9 KRIENPTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSASGKLYQYL 58
                               79**********************************************96 PP
2K-box211.4e-0873142271
                      K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                                ++ +++++++  +++ + e++++    e L+re+R +   d e+ ++  L+ Le++Le++++kiR +++e
  Oropetium_20150105_12373A  73 EAVTHTKVWTDIQQERRAEMEQVGHMCELLERELRFMTVHDGEQYTVPSLELLEHNLETAMRKIRGQQEE 142
                                55677889**********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.651161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-28288IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-243859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-883142IPR002487Transcription factor, K-box
PROSITE profilePS512977.78685177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFSA SGKLYQYLSP  60
TVPSIKELVE RYEAVTHTKV WTDIQQERRA EMEQVGHMCE LLERELRFMT VHDGEQYTVP  120
SLELLEHNLE TAMRKIRGQQ EERYGLCDKL AHSQDLKDVE GGSTSEINGL DLKLGFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-15180184MEF2 CHIMERA
6byy_B4e-15180184MEF2 CHIMERA
6byy_C4e-15180184MEF2 CHIMERA
6byy_D4e-15180184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12373A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750461e-113EU975046.1 Zea mays clone 465896 MADS-box transcription factor 32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644649.11e-103PREDICTED: MADS-box transcription factor 32 isoform X1
SwissprotQ8S1511e-102MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLJ3L3N91e-101J3L3N9_ORYBR; Uncharacterized protein
STRINGOB01G38450.11e-102(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-21MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]