PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12360A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 393aa    MW: 43609 Da    PI: 10.2416
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12360AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.58.1e-2120120194
                                EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                ffkvl   +   ++rl +p +f++++            +++ ++s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++
  Oropetium_20150105_12360A  20 FFKVL---MGDFKKRLKIPPSFCKHIpweastrkanksSKQATSSMAATLEGPSGRTWLVVI--RRSAEGTFFTSGWPKFVQDQ 98 
                                66777...4455668********888*******9999877788*******************..******************** PP

                                T--TT-EEEEEE-SSSEE..EE CS
                         B3  73 gLkegDfvvFkldgrsefelvv 94 
                                 L+e +f+vF++dg+++f+ +v
  Oropetium_20150105_12360A  99 ALRELEFLVFRYDGDTRFTAMV 120
                                **************99986655 PP
2B352.49.6e-17291377598
                                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                +++ +v  s ++++p  f ++h   ++e ++++l+d+ g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+g  
  Oropetium_20150105_12360A 291 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVGAA 369
                                67788999999********9995..345679***************4.444455..9***********************9977 PP

                                EE..EEEEE- CS
                         B3  89 efelvvkvfr 98 
                                ef  +v++fr
  Oropetium_20150105_12360A 370 EF--RVHIFR 377
                                77..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2015126IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-2015126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.36517124IPR003340B3 DNA binding domain
CDDcd100171.03E-1718121No hitNo description
PfamPF023621.6E-1820120IPR003340B3 DNA binding domain
SMARTSM010191.9E-1220124IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-22280377IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-24280377IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-24285377No hitNo description
PROSITE profilePS5086314.099287379IPR003340B3 DNA binding domain
SMARTSM010191.7E-10287379IPR003340B3 DNA binding domain
PfamPF023621.4E-15290377IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MPAAAERQSP WASGERRPHF FKVLMGDFKK RLKIPPSFCK HIPWEASTRK ANKSSKQATS  60
SMAATLEGPS GRTWLVVIRR SAEGTFFTSG WPKFVQDQAL RELEFLVFRY DGDTRFTAMV  120
FGMSGCERED LLVAGNKKRG RPAALRGVSR AKKNKQDDSV GKELVPYRAP PSDQQRLQAA  180
SFSEGTPELV AAAGAVKAEV QDADELALCV MIPAPPSPPA RGPVGGHGLG VAKTRSIQED  240
LGADDDDIPA SVRRYKGYVS RRRAVTGAEL QRAMELAYAF RSSLPYCVMR MSTMHVYYSF  300
MMRFPTGFSR QHLPRERTDV VLRDPGGKAW VVLYIPNTRD RLSRGWCAFA RGNCLEEGDY  360
CVFELVGAAE FRVHIFRVVE PPVPAVRLRS TA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12360A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703066e-82HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969798.10.0B3 domain-containing protein Os01g0723500 isoform X1
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A3L6SU880.0A0A3L6SU88_PANMI; B3 domain-containing protein
STRINGSb03g033260.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-22B3 family protein