PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12321A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 715aa    MW: 75225.2 Da    PI: 6.0919
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12321AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.62.4e-833567133374
                       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                + L ++A+a + g+   a+++Larl+++  p g+p+ R a+y++eAL   l++      ++ +++ ts+ +++ +laa+k fs+
  Oropetium_20150105_12321A 356 DELAAAAKAAEVGNSIGAREILARLNQQLPPIGKPFLRSASYLKEALLLALND-----GHSGSTRLTSPLDVALKLAAYKSFSD 434
                                7899*************************************************.....7777888888889************* PP

                       GRAS  87 vsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetger 164
                                 sP+l+f+++ta qa+l+++ +   +++ iiDfd++ G+QW ++lq+La R+     + p++++T+++s++s++  el+ t+++
  Oropetium_20150105_12321A 435 QSPVLQFANFTATQALLDEIGSTtaSCIRIIDFDLGVGGQWSSFLQELAHRRgtggVSLPMFKLTAFVSSASHHPLELHLTRDN 518
                                ********************9887799************************97655559************************* PP

                       GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                L++fA+ lg+pfef+++   +l+++++ eL   + +E +aV+l +          +l+     +L+lvk+l Pk+vv  ++  d
  Oropetium_20150105_12321A 519 LSQFAADLGIPFEFTPI---NLNAFDPAELISPTaDEIVAVSLPVGCSVRT---PPLP----MLLQLVKQLAPKIVVAFDHGND 592
                                ****************9...999999999955557*********9776654...4555....5********************* PP

                       GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                                +++ +F ++f+++++ ++ l+dsl+a  ++++++++k+Er+l++++++++v  + ++     e+++ Wr+++++aGF+p+pls+
  Oropetium_20150105_12321A 593 RGDLPFSQHFINCFQSCMFLLDSLDAA-GTDADAASKIERFLIQPRVEDAVLGRRRA-----EKAMAWRSAFTSAGFTPMPLSN 670
                                ************************999.8999*******************977665.....99******************** PP

                       GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 a++qa++ll++v+++g++ve+    l l+W++ +LvsvSaWr
  Oropetium_20150105_12321A 671 LAEAQADCLLKRVQVRGFHVEKCGMGLALYWQRGELVSVSAWR 713
                                ******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.288328693IPR005202Transcription factor GRAS
PfamPF035148.5E-81356713IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MRAAPFSAEG NGAGTIEALL CCWPADKGGG GGLVEPTSVL DCRRSPSPPN STSTLSSSLG  60
GAAADSTGVA AVSENSAAAA AADATKWAAP GEHGGGGGGG GRKEEWSGGD LPPIPGTLDV  120
GFNGEEGWDA MLSDAAAAAG QEQTFLNWIM AAPGDLEQPA PPLQHQHLLG NAAAFGFPAS  180
DPLGFSLQHH SAGALASDLS SPGARSLSSS SGSSSKATST FGLLPTEAAL QPPPPPTTTM  240
PFHDGTDIKP PLHGVPTPNL LLHQHQPTPP ASFFMPLHSF PDHQQQPHLP PPPKRHHSMP  300
DNLFLLNNQL QPPLPQCLPF PALHTTAPFQ LQPSLQPPRG AMKTTAAAQQ QQQLLDELAA  360
AAKAAEVGNS IGAREILARL NQQLPPIGKP FLRSASYLKE ALLLALNDGH SGSTRLTSPL  420
DVALKLAAYK SFSDQSPVLQ FANFTATQAL LDEIGSTTAS CIRIIDFDLG VGGQWSSFLQ  480
ELAHRRGTGG VSLPMFKLTA FVSSASHHPL ELHLTRDNLS QFAADLGIPF EFTPINLNAF  540
DPAELISPTA DEIVAVSLPV GCSVRTPPLP MLLQLVKQLA PKIVVAFDHG NDRGDLPFSQ  600
HFINCFQSCM FLLDSLDAAG TDADAASKIE RFLIQPRVED AVLGRRRAEK AMAWRSAFTS  660
AGFTPMPLSN LAEAQADCLL KRVQVRGFHV EKCGMGLALY WQRGELVSVS AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-263547134375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12321A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446917.10.0scarecrow-like protein 6
RefseqXP_025824521.10.0scarecrow-like protein 6
TrEMBLA0A2T8IDF80.0A0A2T8IDF8_9POAL; Uncharacterized protein
TrEMBLC5YDJ70.0C5YDJ7_SORBI; Uncharacterized protein
STRINGSb06g024820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-87GRAS family protein