PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12312A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 317aa    MW: 33012.8 Da    PI: 8.4088
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12312AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023526223
                               EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                               +C+ C ++F ++  L  H+r H
  Oropetium_20150105_12312A  5 TCKLCYRRFGSPRALAGHMRAH 26
                               7*******************99 PP
2zf-C2H210.60.0018245267123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++Cp+C ++F++   L  H r+H
  Oropetium_20150105_12312A 245 HQCPHCFRVFPSGQALGGHRRSH 267
                                79*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.16426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078427IPR007087Zinc finger, C2H2
PfamPF139121.2E-4527IPR007087Zinc finger, C2H2
SuperFamilySSF576677.34E-6526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576677.34E-6173197No hitNo description
SMARTSM0035541178198IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-10178202IPR007087Zinc finger, C2H2
SMARTSM003550.097245267IPR015880Zinc finger, C2H2-like
PfamPF139129.5E-10245268IPR007087Zinc finger, C2H2
PROSITE profilePS501578.954245267IPR007087Zinc finger, C2H2
PROSITE patternPS000280247268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAKTTCKLCY RRFGSPRALA GHMRAHSIAA AKSQQISSAS SGSTSVVAGG GEDDGDARKP  60
VQKGYVLREK PKRRVRLAES DFSDRESETT GTGFLPASSP STKHGHAAGS GDAEPVSSVS  120
DGATQQEEDV ALSLMMLSRD SWPTPPLLSS YHRADSDDDD GGSHARPIAV AAQKRTKYEC  180
PACKKVFRSY QALGGHRASN VRGGKGGCLA PPLSAPPPPS PMRPLLPEYD GGGGGEGASK  240
AHQPHQCPHC FRVFPSGQAL GGHRRSHHCS GDVPGAADPP VAMKSVGFID LNLPPTLDDV  300
ELSAVSDPFL SSKPAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16975KPKRRVR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12312A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652618.11e-107PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A3L6Q7111e-122A0A3L6Q711_PANMI; Zinc finger protein ZAT1-like
STRINGOB04G28040.11e-107(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-28C2H2-like zinc finger protein