PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_12296A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36602.3 Da PI: 9.5778 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.2 | 5.7e-11 | 23 | 68 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEd l + v+ +G+++W++I ++ + Rt+k+c++rw + Oropetium_20150105_12296A 23 KGPWMEEEDAVLREHVRVHGPRDWSSIRSEGLLPRTGKSCRLRWVN 68 79*************************9886677**********87 PP | |||||||
2 | Myb_DNA-binding | 37.6 | 4.9e-12 | 79 | 119 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++ +E+ +d+ +++G++ W+ Ia++++ gRt++++k++w Oropetium_20150105_12296A 79 KFSSDEERVVLDLQARFGNK-WAMIAAYLP-GRTDNDVKNFWS 119 799*****************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.909 | 18 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-18 | 20 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.81E-26 | 21 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-9 | 22 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-10 | 25 | 70 | No hit | No description |
Pfam | PF13921 | 4.4E-10 | 26 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-15 | 72 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-9 | 76 | 124 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.585 | 78 | 126 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.3E-10 | 79 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.83E-9 | 79 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence Send to blast |
MARAPVGARR RARAADGWEA VRKGPWMEEE DAVLREHVRV HGPRDWSSIR SEGLLPRTGK 60 SCRLRWVNKL RPNLKSCCKF SSDEERVVLD LQARFGNKWA MIAAYLPGRT DNDVKNFWST 120 RQKRLARLMS PLRPRQFRKN LRLEKAAASS SPESRLAPDP ILETIPLEGS SSGDQFHART 180 AFRNPQKSEQ VPYDQTGSQL FGFGGAPPPV ALATDIQATS SASLWPPQLQ LYPPPYPLLD 240 FPGTWGSSGM APGFVSAGAP YDFAYHQEQF SMMQSSLMTS PFFGMNDGVK IEHRGPPDQF 300 DDLPPDLYNN SADQLPPASS PSRTISDF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-25 | 4 | 124 | 3 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_12296A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL663000 | 1e-39 | AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence. | |||
GenBank | AL731613 | 1e-39 | AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence. | |||
GenBank | AP014960 | 1e-39 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-39 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855218 | 1e-39 | CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824013.1 | 1e-110 | probable transcription factor MYB58 | ||||
Swissprot | Q0JB89 | 8e-84 | MYB58_ORYSJ; Probable transcription factor MYB58 | ||||
TrEMBL | A0A2S3I9S8 | 1e-109 | A0A2S3I9S8_9POAL; Uncharacterized protein | ||||
STRING | Si012032m | 1e-105 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5700 | 33 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60460.1 | 3e-59 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_12296A |
Publications ? help Back to Top | |||
---|---|---|---|
|