PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12291A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 235aa    MW: 25909.5 Da    PI: 8.7139
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12291AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1973127256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  Oropetium_20150105_12291A  73 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTK 127
                                788899***********************************************98 PP
2HD-ZIP_I/II129.31.5e-4173162191
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev
  Oropetium_20150105_12291A  73 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEV 156
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreel 91 
                                +eLr +l
  Oropetium_20150105_12291A 157 QELR-AL 162
                                ***9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-1958123IPR009057Homeodomain-like
SuperFamilySSF466895.43E-1964130IPR009057Homeodomain-like
PROSITE profilePS5007117.45969129IPR001356Homeobox domain
SMARTSM003897.4E-1871133IPR001356Homeobox domain
PfamPF000466.6E-1773127IPR001356Homeobox domain
CDDcd000863.18E-1673130No hitNo description
PRINTSPR000314.1E-6100109IPR000047Helix-turn-helix motif
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PRINTSPR000314.1E-6109125IPR000047Helix-turn-helix motif
SMARTSM003404.4E-25129172IPR003106Leucine zipper, homeobox-associated
PfamPF021832.1E-11129163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MIERGEDLGL SLSLSSSLAP RTHHVALLLH SPEKRFLEMP LLPSKRSEVA AEEGLRGGGS  60
DEEDGGCGMD GSRKKLRLSK DQSAVLEDSF REHPTLNPRQ KAALAQQLGL RPRQVEVWFQ  120
NRRARTKLKQ TEVDCEFLKR CCETLTEENR RLQKEVQELR ALKLVSPHLY MHMSPPTTLT  180
MCPSCERVSN SNNNTNSADR RAGSIVVPAA PGDGAGVCHR PIAVRPPQQS LASS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17177SRKKLRL
2121129RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12291A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749801e-176EU974980.1 Zea mays clone 462177 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
GenBankKJ7283621e-176KJ728362.1 Zea mays clone pUT6644 HB transcription factor (HB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976428.11e-126homeobox-leucine zipper protein HOX17
SwissprotQ01I231e-110HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBLA0A0A9IUY91e-126A0A0A9IUY9_ARUDO; Uncharacterized protein
STRINGSi010958m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.14e-69homeobox-leucine zipper protein 4