PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12269A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GATA
Protein Properties Length: 278aa    MW: 30446.8 Da    PI: 9.0585
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12269AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.9e-17741135
                       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                               C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Oropetium_20150105_12269A  7 CRHCGVTSTPLWRNGPADKPVLCNACGSRWRTKGS 41
                               ****************77777***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.8E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-12546No hitNo description
CDDcd002021.92E-15640No hitNo description
PfamPF003201.7E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-13741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.385740IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPADKPVLCN ACGSRWRTKG SLENYTPMHR RDDIDDEGPR  60
VSKLRPPTSK PKAQKAKKMP NHSILENGPF SGQNFRRMVD ADPSNRSSSG SAVSYSESYA  120
TFGAADASEM TGSAQSHAWE SLVPSRKRSR INRPKASSVE KLAKDLNSIM HEEQLYYLSG  180
SSEEDLLYYS ETPMGSVEIG SGSVLLRNPH SKSLEEESEA SSIPAENKSY ITTESYSGSA  240
SFVVHSGKDR SNLNAAIEGP KRPRLQIEDS VRRYSTL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12269A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149109.11e-143uncharacterized protein LOC100282731
SwissprotQ8W4H15e-64GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0A9DBB71e-149A0A0A9DBB7_ARUDO; Uncharacterized protein
STRINGGRMZM2G077002_P011e-143(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.37e-66GATA transcription factor 26