PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12219A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 294aa    MW: 33978.6 Da    PI: 7.4524
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12219AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.64e-56161451129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksg 81 
                                +ppGfrFhPtdeelv++yL+kkv+ kk++l +vik+vd+yk+ePwdL++  k+ a +++ewyfFs++dkky+tg+r+nrat++g
  Oropetium_20150105_12219A  16 VPPGFRFHPTDEELVDYYLRKKVALKKIDL-DVIKDVDLYKIEPWDLQEkcKIGAeDQNEWYFFSHKDKKYPTGTRTNRATTAG 98 
                                69****************************.9***************952444443555************************* PP

                        NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                +Wkatg+dk++++ k+ lvg++ktLvfykgrap+g+k+dW+mheyrle
  Oropetium_20150105_12219A  99 FWKATGRDKPIYV-KNCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 145
                                *************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6112165IPR003441NAC domain
PROSITE profilePS5100559.63916165IPR003441NAC domain
PfamPF023651.9E-2817144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQNFDHHKKM DAFTHVPPGF RFHPTDEELV DYYLRKKVAL KKIDLDVIKD VDLYKIEPWD  60
LQEKCKIGAE DQNEWYFFSH KDKKYPTGTR TNRATTAGFW KATGRDKPIY VKNCLVGMRK  120
TLVFYKGRAP NGQKSDWIMH EYRLETNENG TTHEEGWVVC RVFRKRLATV PRMAGDSPYW  180
FNDHGGFMAP ELGSPSQAAL HHQQSAMVYH RHPSYPCKVE LEYHHLLPQE HLMQLPPLDS  240
PKLPDLIGGS VSTLQPCGLT QQQVASRYME QELQAEQVYL TAGDASGADW RALD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-5161665169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12219A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750880.0KT075088.1 Panicum virgatum secondary wall NAC master switch (SWN6A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448236.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-114NAC7_ARATH; NAC domain-containing protein 7
TrEMBLC5YCY60.0C5YCY6_SORBI; Uncharacterized protein
STRINGSb06g023780.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-84NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]