PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_12203A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 720aa MW: 78565.1 Da PI: 8.2732 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3e-14 | 154 | 201 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d + ++G g+W++ +++ g+ R +k+c++rw +yl Oropetium_20150105_12203A 154 KGLWSPEEDQKLRDFIVRYGHGCWSALPAKAGLQRNGKSCRLRWINYL 201 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.9e-17 | 208 | 252 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++ eE+e +++++lG++ W+ Iar+++ gRt++++k++w++yl Oropetium_20150105_12203A 208 GMFSNEEEETVMKLHAKLGNK-WSHIARHLP-GRTDNEVKNYWNSYL 252 5699*****************.*********.*************97 PP | |||||||
3 | Myb_DNA-binding | 57 | 4.4e-18 | 442 | 489 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd v+ G+g+W++ ++ g++R++k+c++rw +yl Oropetium_20150105_12203A 442 KGPWTPEEDKLLVDFVQANGSGNWRLLPKLAGLNRCGKSCRLRWTNYL 489 79********************************************97 PP | |||||||
4 | Myb_DNA-binding | 50.8 | 3.7e-16 | 495 | 540 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++TteE+ +v+++ G++ W+ Ia+ ++ gRt++++k++w+++l Oropetium_20150105_12203A 495 RGAFTTEEHNTIVQLHGIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 540 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.756 | 149 | 201 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-27 | 152 | 248 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-11 | 153 | 203 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-12 | 154 | 201 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-20 | 155 | 208 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-9 | 157 | 201 | No hit | No description |
PROSITE profile | PS51294 | 25.764 | 202 | 256 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 206 | 254 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 208 | 252 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-25 | 209 | 255 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.89E-12 | 210 | 252 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 433 | 492 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.304 | 437 | 489 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-30 | 439 | 536 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 441 | 491 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 442 | 489 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-10 | 444 | 489 | No hit | No description |
PROSITE profile | PS51294 | 26.468 | 490 | 544 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-25 | 493 | 544 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-14 | 494 | 542 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 495 | 540 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.26E-9 | 497 | 540 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MATHVDVQWC RDTAVHGEAS QRGNVWKQQR RHAYAAYGNV SAQTVPRTDN WCGGRRLPTS 60 LPQPHPNMLR PYSVRPERPL PARQRRPTTP QCERTSNLSL LSSVLCGFTL PPLPPPRFLA 120 VTCSTSSSVA FLTPPPAKAM GCKACEKPKV QYRKGLWSPE EDQKLRDFIV RYGHGCWSAL 180 PAKAGLQRNG KSCRLRWINY LRPGLKHGMF SNEEEETVMK LHAKLGNKWS HIARHLPGRT 240 DNEVKNYWNS YLKKRVEGAQ ASKCADDAPP ADSDDVSGSP NTSETTSQER LNRPASSASS 300 SPDDSSCLTV TEPAATATAV RPHAPVLPKV MFADWLDMDM DYGTSLVAAP DGPCGGAADS 360 LQGLDGGGVC WGFDVAADQM DVQGGGFCDL LSMSERTTNS NVQRQPQPLQ HYSQQHQQWL 420 RQNQMATTMG RTPCCDGKGV KKGPWTPEED KLLVDFVQAN GSGNWRLLPK LAGLNRCGKS 480 CRLRWTNYLR PDIKRGAFTT EEHNTIVQLH GIVGNKWSMI AAQLPGRTDN EIKNYWNTHL 540 KKQLRQESSL GEDAAARLAA PVAASSSPAA RHMAQWETAR LEAEARLSLL SXXXXXXXXX 600 XXXXXGAEHA ATAPDIFLRL WNSEVGESFR GAAAGSVQTA NALLAVPTGA VLRPVPGDES 660 SAASTNDNNN GAAMMADEYQ AFLDMAVEEF ALLHGRLGGF AVFPAADVLA GASLFAPFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 154 | 544 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00114 | ampDAP | Transfer from AT3G61250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_12203A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091592 | 1e-124 | FP091592.1 Phyllostachys edulis cDNA clone: bphylf055c23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823961.1 | 1e-135 | transcription factor LAF1-like | ||||
Swissprot | Q9M2D9 | 3e-77 | MYB17_ARATH; Transcription factor MYB17 | ||||
STRING | Si012304m | 1e-133 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 9e-67 | myb domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_12203A |