PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_11992A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Nin-like

Protein Properties

Length: 937aa MW: 102100 Da PI: 5.8633

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_11992A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.7	4e-27	565	615	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sl++l+kyFs++++dAA +Lgvc+T+LKriCRq+GI+RWP+Rki+++ Oropetium_20150105_11992A 565 EKNFSLDVLRKYFSGSLRDAAASLGVCPTTLKRICRQHGISRWPSRKINKV 615 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	2.59E-5	210	284	IPR029016	GAF domain-like
Gene3D	G3DSA:3.30.450.40	6.0E-4	210	290	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.586	554	635	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-24	568	615	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.35E-24	828	917	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.7E-23	831	913	No hit	No description
PROSITE profile	PS51745	24.992	834	916	IPR000270	PB1 domain
SMART	SM00666	1.0E-21	834	916	IPR000270	PB1 domain
Pfam	PF00564	4.8E-17	835	915	IPR000270	PB1 domain
CDD	cd06407	4.03E-30	835	915	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence Send to blast
MDVPAPSNRA GCNGTISSPM GSSDDPFGAV MMSFDGYSEL CSPSVADQLF SLLNDPSATQ 60 QMFAMWSGSS PRASGMNQDI LFDACSGPME TAAAPTQKIN LASPMNTTEA NRGVKDSDEI 120 VPNNGQLQGS NIIPRPVVGN LLADKMLMAL SLFRKSLSDG VLAQVWMPVE HNGQLLLSTR 180 EQPYLLDQVL AGYREVSRHF LFSVKEEPGL HLGLPGRVFI SGVPEWTSNV LYYSKPEYLR 240 MDHALHHKIR GSLAMPIYDP SKGSCCAVLE LVTNKEKPDF DAEMDSVCHA LQAVNLLTTI 300 DRSSQKAYSE NQKSAFTEIL DVLRAICHAH MLPLALTWVP ASNGIDNGCA VGMDPGIDSE 360 LGKAILHIHE SACYVNDAKM QGFLHACAER HLDKGQGIAG RALKSNLPFF SPDIREYTIE 420 DYPLAHHARK FGLHAAVAIR LRSTYTGSDD YILEFFLPVN CKGSGEQQML LNNLSTTMQK 480 ICKSLRTVSE AEVDSVSPCS AEIYNNTNDC LLPTSNSDSS SHDDQPVTES TFQDLSLVDK 540 HGDMEPEQAH TSAMRVPDKK RSTSEKNFSL DVLRKYFSGS LRDAAASLGV CPTTLKRICR 600 QHGISRWPSR KINKVNRSLK KIQTVINSVH GVDRSLQYDP ATGSLVPAVS TLPDKMPFSS 660 CDTLLSPSVG KTAERKSNEK SEQGFSSPDG WQREELQVSS APKLEGDIFQ VLASDNNGDH 720 VANGTQNSTN SEGVQGPVYP ISAVHSLHTR ETGYIDSSTL LHPSIDGIKD DQTTRRNSSF 780 VQQADVDMAD GHDAKEHTNP STSGMTDSSS GSASSQPTFK GNPRHALKDR TSPALTVKAT 840 YNGDTVRFKF LPSTGWYNLL EEIAKRFKLA AGTFQLKYKD DEDEWVILAT DSDLQECIDV 900 LDSIGSRNVK LQVRDLPCLV SSSGSSSCLQ VEAHSS*

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence Send to blast

MDVPAPSNRA GCNGTISSPM GSSDDPFGAV MMSFDGYSEL CSPSVADQLF SLLNDPSATQ  60
QMFAMWSGSS PRASGMNQDI LFDACSGPME TAAAPTQKIN LASPMNTTEA NRGVKDSDEI  120
VPNNGQLQGS NIIPRPVVGN LLADKMLMAL SLFRKSLSDG VLAQVWMPVE HNGQLLLSTR  180
EQPYLLDQVL AGYREVSRHF LFSVKEEPGL HLGLPGRVFI SGVPEWTSNV LYYSKPEYLR  240
MDHALHHKIR GSLAMPIYDP SKGSCCAVLE LVTNKEKPDF DAEMDSVCHA LQAVNLLTTI  300
DRSSQKAYSE NQKSAFTEIL DVLRAICHAH MLPLALTWVP ASNGIDNGCA VGMDPGIDSE  360
LGKAILHIHE SACYVNDAKM QGFLHACAER HLDKGQGIAG RALKSNLPFF SPDIREYTIE  420
DYPLAHHARK FGLHAAVAIR LRSTYTGSDD YILEFFLPVN CKGSGEQQML LNNLSTTMQK  480
ICKSLRTVSE AEVDSVSPCS AEIYNNTNDC LLPTSNSDSS SHDDQPVTES TFQDLSLVDK  540
HGDMEPEQAH TSAMRVPDKK RSTSEKNFSL DVLRKYFSGS LRDAAASLGV CPTTLKRICR  600
QHGISRWPSR KINKVNRSLK KIQTVINSVH GVDRSLQYDP ATGSLVPAVS TLPDKMPFSS  660
CDTLLSPSVG KTAERKSNEK SEQGFSSPDG WQREELQVSS APKLEGDIFQ VLASDNNGDH  720
VANGTQNSTN SEGVQGPVYP ISAVHSLHTR ETGYIDSSTL LHPSIDGIKD DQTTRRNSSF  780
VQQADVDMAD GHDAKEHTNP STSGMTDSSS GSASSQPTFK GNPRHALKDR TSPALTVKAT  840
YNGDTVRFKF LPSTGWYNLL EEIAKRFKLA AGTFQLKYKD DEDEWVILAT DSDLQECIDV  900
LDSIGSRNVK LQVRDLPCLV SSSGSSSCLQ VEAHSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_11992A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823107.1	0.0	protein NLP2-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2S3I833	0.0	A0A2S3I833_9POAL; Uncharacterized protein
STRING	Pavir.J35714.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_11992A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]