PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11797A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 352aa    MW: 38688.5 Da    PI: 8.9398
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11797AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.41.5e-15275300126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                +ktelC+ + +tG C+yGd+C+FaHg
  Oropetium_20150105_11797A 275 FKTELCNKWEETGACPYGDQCQFAHG 300
                                79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.3E-19269307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10271306IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601274302IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-12275300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-10308338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-7309338IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338312340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MQEALVSPAD ADRLIRSALE LKPFAFGDQR LSSPRYFGDD ALFRCSSPFS PSFGFSSTPS  60
PLATSSVCSL SPXXXXXXXX XXXXXXXXXD VVTSVGHRLQ LARLALQYQE AADRYELCLA  120
RLAEAADEAA ALRRENAELR VANGDLARRL AVLIGGKQSA AAVAVAADEI RRLRHGGEQN  180
VVPAAAPENQ QRTVLPKSIS VRSKEYLKMN KQPTTKAPAT PVANNRKPRA SNPTVNNHSS  240
VSSYSRLSNS NEETNEEQRA GGGGVELEVY NQGMFKTELC NKWEETGACP YGDQCQFAHG  300
VAELRPVIRH PRYKTQVCRM VLAGEPCPYG HRCHFRHTLT PAERILLLRR P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21275337466Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11797A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0348002e-96BT034800.1 Zea mays full-length cDNA clone ZM_BFb0019C18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311485.11e-137zinc finger CCCH domain-containing protein 9 isoform X2
SwissprotA2ZVY51e-107C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A1W0VYN31e-134A0A1W0VYN3_SORBI; Uncharacterized protein
STRINGMLOC_5666.31e-133(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-51C3H family protein