PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11733A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 386aa    MW: 40686.4 Da    PI: 8.864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11733AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055253275123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC+ C k F    +L  H+r+H
  Oropetium_20150105_11733A 253 HKCKECEKAFVKGVQLGGHMRKH 275
                                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.014126149IPR007087Zinc finger, C2H2
SMARTSM003550.032126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702126153IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SMARTSM003557.1200224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954200229IPR007087Zinc finger, C2H2
PROSITE patternPS000280202224IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-8203275No hitNo description
PfamPF139120.0097205225IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-5250275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-7253277IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.305253280IPR007087Zinc finger, C2H2
SMARTSM003550.1253275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MPQQCNEYKF DRRRLLANLD GELEEGEYGP GYQSSSDTED YYNRDSSDSD KTISDLDATA  60
TSAAASQPNR KGNNASASSA EAIRLGGARA YSAAAANHYG RGGSPSSFAA VNPYGRASAS  120
PAAPMFPCSV CEKEFASKKA RCGHMKAHAQ EAVRGGKAEV KGKGIKKVNK RSVVEVPRAW  180
TVTGRRAKIV HKRTFDPDGH MCGYPECGKW FASNQALGGH VAGHKAKELA AAAAETNRDG  240
AGTGPPSSEE KLHKCKECEK AFVKGVQLGG HMRKHRPIES KNKRRLVQPL PPPPEVAAGP  300
AHHDTLSQPN KVESPALAPA VDASSQPALA AAAAAEVGPE PATEPLMTRP VIIFGVDIAM  360
EVQTPPAQER SPATKDSSAS TGEQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11733A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136