PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11718A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 371aa    MW: 40274.2 Da    PI: 8.9657
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11718AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1673.1e-21232294163
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                +ke krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN++L++e+++l + ++kl++e+
  Oropetium_20150105_11718A 232 DKEAKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRNEINKLIESSQKLRMEN 294
                                689*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.2E-18199IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.4E-15230291No hitNo description
SMARTSM003384.2E-19232296IPR004827Basic-leucine zipper domain
PfamPF001707.4E-20233294IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.323234297IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-10236291No hitNo description
CDDcd147024.12E-20237291No hitNo description
PROSITE patternPS000360239254IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGHEEAVVTQ ISAKAPSPAK LYFLQDQPAT FPYLDWSAMQ GHFVQTYYGA GILPPAFFNP  60
GHVPPPFMWA PQNLPTPAFG KPYPAIYPPA GGFLHPFMPL MVNPLNAEPA KSVNSKDNSL  120
NKKLKEADGT ALSTGSGNSE KTSGDYSLEG SSDGNNQRAC GTPKKRSLDD MTTSGAETRG  180
ASTPNDKPRE PERISTLASV RIPDTAIKSC ASTGSDFRIN GTQSTEWPAK DDKEAKRERR  240
KQSNRESARR SRLRKQAETE ELARKVELLT AENTSLRNEI NKLIESSQKL RMENSALMEK  300
LTKESASDEA QEEVLPEQTA AAPPPARVVK NFLSMMDGAR SSSRHMEHGA PRLRQLLGSG  360
PLPADAVAAN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248254RRSRLRK
2248255RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11718A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969366.10.0G-box-binding factor 3
RefseqXP_022682183.10.0G-box-binding factor 3
TrEMBLD2CP300.0D2CP30_ELECO; G-box binding factor 3
STRINGSi001929m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.22e-41G-box binding factor 3