PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_11698A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | GATA | ||||||||
Protein Properties | Length: 232aa MW: 24390.5 Da PI: 7.3933 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.4e-20 | 107 | 141 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ Oropetium_20150105_11698A 107 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 141 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 14.668 | 101 | 156 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.71E-13 | 101 | 142 | No hit | No description |
SMART | SM00401 | 2.4E-17 | 101 | 152 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.9E-17 | 105 | 141 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.49E-13 | 106 | 138 | No hit | No description |
Pfam | PF00320 | 5.1E-18 | 107 | 141 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 107 | 132 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MLHEAAPCTC GLLYGSCGGG CSLLFAGDHH HHYYNYKQCG GDGGEGGPYG SGSVDCTLSL 60 GTPSTRRAEA ARAAPVAASG MHWDPSSGCN NNNSSSRHQE SASARRCANC DTTSTPLWRN 120 GPRGPKSLCN ACGIRYKKEE RRXXXXXXXX XXLASSDTGT EYAAAYGYAH HQPQKQWGCY 180 GPAAASFGTM FGDAAAADDG PCLPWGLGVM PAPSPAFGTA VREMPSLFQY Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_11698A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073464 | 3e-45 | AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence. | |||
GenBank | AK101287 | 3e-45 | AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence. | |||
GenBank | DQ784546 | 3e-45 | DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569499.1 | 5e-89 | GATA transcription factor 19 | ||||
TrEMBL | I1HQ38 | 1e-87 | I1HQ38_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G45750.1 | 2e-88 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 1e-26 | GATA transcription factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_11698A |