PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11665A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WOX
Protein Properties Length: 665aa    MW: 69341.6 Da    PI: 7.0653
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11665AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.31.8e-15168228257
                                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                ++R+++ +eq+++Le+ F++   +p ++e+ ++  +l     + +++V++WFqNr+a+ k+
  Oropetium_20150105_11665A 168 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRLRLqeygPVGDANVFYWFQNRKARSKN 228
                                89*****************99****************99999****************995 PP
2Wus_type_Homeobox1062.4e-34167229264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RW+P+peQi+iLe++++sG+++P+++ei ri+ +L+eyG ++d+NVfyWFQNrkaR+++k
  Oropetium_20150105_11665A 167 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRLRLQEYGPVGDANVFYWFQNRKARSKNK 229
                                579**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.07E-11162230IPR009057Homeodomain-like
PROSITE profilePS500719.766164229IPR001356Homeobox domain
SMARTSM003891.9E-6166233IPR001356Homeobox domain
CDDcd000869.25E-7167229No hitNo description
Gene3DG3DSA:1.10.10.601.4E-5167229IPR009057Homeodomain-like
PfamPF000463.7E-13168227IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MASASELRDH SLRGTLANRG GVVGSAIISG SSCSTGSARI EHQQLKLNPL ELSAESEICW  60
LQERGQGERG EEDRGPSLSL SKAIERTSGG IMASFNNNRH WPSMFRSKHA VQPWQQPDIS  120
GSPPSLVSGG STTTTGSSIK QSFPGNKRSR FLMSFALIGG EERTPDPKPR WNPRPEQIRI  180
LEAIFNSGMV NPPRDEIPRI RLRLQEYGPV GDANVFYWFQ NRKARSKNKL RGAAGGGAAA  240
GRVALPARTT PPARHQPVAA PLVTPHPPHQ QQIQTQTQTQ TQQVQLPHYS PVQQQAPTSS  300
SSSSSDRSSG SSRPAAAKPA AMMSATEATD LLGPLAAACP HQIYYQGQPL APAAPAPPSP  360
KVPQQDHPVA AADEAIFLPW PQGYCLSAAE LAAILGTQYM HVPAPVQHQP QALPSLPFLG  420
LCNEIATNGH RSWGSSGFSQ NWPPSGAGAG AADHHHELCK NTAAALNTVA IDTVSHEDAT  480
TKPGGLLQYD FGVSAAVEAA TTSTAAVTLP LSVSPDAVTV ASVAVSTAGL MTGSATTTAA  540
ANGTITNYDQ FQGLADGVVA GGEGITGALA GVAAVATPPQ VAADPADEVS GVAVLCIGES  600
ATGRSVVREV AASRHLDVRA QFGEAAVLFR YLGDGDRPVH VPVDAASGCT VEPLQHGVVY  660
WVLV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11665A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037602e-83AP003760.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05.
GenBankAP0067532e-83AP006753.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0039D04.
GenBankAP0149572e-83AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0149632e-83AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-83CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCP0126152e-83CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819605.11e-149WUSCHEL-related homeobox 7-like
SwissprotQ0JKK63e-99WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA0A2T7DIP61e-149A0A2T7DIP6_9POAL; Uncharacterized protein
STRINGGRMZM2G133972_P011e-132(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-38homeobox-3