PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11649A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 315aa    MW: 34790.6 Da    PI: 9.0919
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11649AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.95e-33662061128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                                lp+G++F+Ptd+el+ e+L+ k++ +       ++++   i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+rk+r
  Oropetium_20150105_11649A  66 LPAGVKFDPTDQELL-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRR 147
                                799************.99****998885665443333333665557**********.555555677****************** PP

                        NAM  77 atk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                +++      + +W++tgk+++v+s +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Oropetium_20150105_11649A 148 KVHtdeqggETRWHKTGKTRPVFS-NGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206
                                744456555778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-3858225IPR003441NAC domain
PROSITE profilePS5100533.3766225IPR003441NAC domain
PfamPF023654.4E-1567206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTWCTSFNDV RAVENNLXXX XXXXXXXKQQ QASSHVSLIR TCPSCGHRAQ YEQVQAAATI  60
QDLPGLPAGV KFDPTDQELL EHLEGKARPD ARKLHPLIDE FIPTIEGENG ICYTHPERLP  120
GVGKDGLIRH FFHRPSKAYT TGTRKRRKVH TDEQGGETRW HKTGKTRPVF SNGKLKGYKK  180
ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EEKDGELVVS KVFYQTQPRQ CGGSMTTAAK  240
DAVPIAASAA AATDHHQHNG NNNNMLKEAG IVDFYSPAAL IGYNQAAPNN RAAASSHLLP  300
NFEVHTAGAA GFGP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11649A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1027940.0AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814631.10.0NAC domain-containing protein 73-like isoform X1
SwissprotO494591e-123NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A3L6SIG40.0A0A3L6SIG4_PANMI; NAC domain-containing protein 73-like
STRINGPavir.Eb02718.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-124NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]