PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11517A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 289aa    MW: 29997.9 Da    PI: 10.2426
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11517AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.83.9e-32110216197
                                EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                f+k+ tpsdv+k++rlv+pk++ae+h          gg++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL
  Oropetium_20150105_11517A 110 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsaagGGESSKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 193
                                89*********************************988889******************************************* PP

                                -TT-EEEEEE-SSSEE..EEEEE CS
                         B3  75 kegDfvvFkldgrsefelvvkvf 97 
                                 +gD+v F+++  ++++l++  +
  Oropetium_20150105_11517A 194 SAGDVVGFYRSAADGGKLFIDCR 216
                                *********98889998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-40105221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-30106215IPR015300DNA-binding pseudobarrel domain
CDDcd100175.80E-29108208No hitNo description
SMARTSM010196.5E-23110218IPR003340B3 DNA binding domain
PROSITE profilePS5086313.648110219IPR003340B3 DNA binding domain
PfamPF023621.5E-28110216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDSASSLVDD TSSGSGGAST DKLRALAAAA AAGPPLERVG SGASGVAEVV DMLRKHTYFD  60
ELAQNRRAFA AVVASTTTAS PTLASRDHYH SSSGSAASPR PAAAARNHLF DKTVTPSDVG  120
KLNRLVIPKQ HAEKHFPLQL PSAAGGGESS KGVLLNFEDA AGKVWRFRYS YWNSSQSYVL  180
TKGWSRFVKE KGLSAGDVVG FYRSAADGGK LFIDCRLRPN GAAVSHPVVS SAPPPVAAKA  240
VRLFGVDLLS APAAPQDAVV GCKRARDLAA TAPQAAFKKQ LVVELALV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-511042192114B3 domain-containing transcription factor NGA1
5os9_B2e-511042192114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11517A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278841e-114KJ727884.1 Zea mays clone pUT5977 ABI3VP1 transcription factor (ABI33) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398137.11e-107AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X2
SwissprotQ8RZX91e-108Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLI1NQW31e-106I1NQW3_ORYGL; Uncharacterized protein
STRINGORGLA01G0225300.11e-106(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-58related to ABI3/VP1 2