PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11246A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 414aa    MW: 46442.8 Da    PI: 5.5235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11246AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000344467223
                               EETTTTEEESSHHHHHHHHHH..T CS
                    zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                               +C+dCgk+++++ +   H ++  H
  Oropetium_20150105_11246A 44 VCSDCGKPCRSQTDVDLHTKRtgH 67
                               8*****************998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
SuperFamilySSF469341.69E-16100165IPR009060UBA-like
Gene3DG3DSA:1.10.8.101.7E-10102157No hitNo description
CDDcd142901.27E-20111159No hitNo description
PROSITE profilePS5003010.836111152IPR015940Ubiquitin-associated domain
SMARTSM001650.0018113151IPR015940Ubiquitin-associated domain
PfamPF006273.5E-6113149IPR015940Ubiquitin-associated domain
SuperFamilySSF1435038.63E-27303409IPR018997PUB domain
CDDcd104614.22E-63307413No hitNo description
PfamPF094097.4E-23320390IPR018997PUB domain
SMARTSM005803.7E-23323386IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAGLSLQCGD CGVLLRSVEE AQAHAEATSH SNFAESTEAV LNLVCSDCGK PCRSQTDVDL  60
HTKRTGHAEF ADKTMEAAKP IDLGAPPKPD AEAMDVDASA SGEQQEMVVP EVNKEMLADL  120
EAMGFTAARA TRALHFSGNS TIEGAINWLS EHQEDPDIDE MPMVPANTKT EANKPSLTPE  180
EVKMKAQELR ERARKKKEEE EKRMEREREK ERIRIGKELL EAKKMEEQNE RKRMIELRRL  240
EKEEEKRARE KIRQKLEEDK AERRRKLGLP PEDPAAVKPS APPPAEEKKS ALPIRPATKA  300
ERMRDCLRNL KQQNKDDDAK VKRAFQTLLA YVGNVAKKPD EEKFRKIRLS NATFQERVGN  360
LPGGIEFLQL CGFEKLEDNE FLFLARDKVD MAVLNTAGAE LNSAITNPFF GVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11246A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0942620.0FP094262.1 Phyllostachys edulis cDNA clone: bphylf035k19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815335.10.0chromatin assembly factor 1 subunit A
TrEMBLA0A0D9VG800.0A0A0D9VG80_9ORYZ; Uncharacterized protein
STRINGLPERR02G14040.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517