PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11155A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 287aa    MW: 29859.8 Da    PI: 6.6646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11155AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-1081124553
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                                 +++Err R  +N+ +  Lr+++P+      +K++Ka+i++ A+eYI +
  Oropetium_20150105_11155A  81 VPAMERRHRLSLNDTLYALRSVVPNI-----TKMDKASIVKDAIEYILQ 124
                                579**********************7.....7***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-1074122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.74576125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1180125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-881124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.91E-1082124No hitNo description
SMARTSM003532.2E-782131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSDPDIKTLV CSGLDRQLDD ERAYIDAAAC IEDDSAVPGP GSGHSQHHDG YSSSLDAGAN  60
DDYSSFATAA AAASRRGSRN VPAMERRHRL SLNDTLYALR SVVPNITKMD KASIVKDAIE  120
YILQPVAEPE IGLREGSICK GCSPPAWGVI SLLESASTPH ALLDGVVAAP SSSIAAIAAM  180
VDSCVHDGHA AVLPTKKMKT ALSPGSTASH ASSSSAAASP PITVDTLEVR EGVWCVDKVL  240
VVSVVCRHRR RDAVAKVCRA LDGLRLRIIA TNLTSASGTV THTALV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11155A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Aa02630.1.p2e-46(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.38e-13bHLH family protein