PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_11009A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 373aa MW: 40279.9 Da PI: 7.1527 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 30.4 | 1.1e-09 | 31 | 128 | 31 | 126 |
NAM 31 eevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya....tgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108 ++ +++ ++y +eP L + +fF+++ k+++ ++ r++ra+ g W + +++v++ +g ++g + L + Oropetium_20150105_11009A 31 HQSFASWEVYACEPGVLXxXxXXXXXXGDRFFFTTTCKRQPqeagKSVRAHRAAGPGSWYSHSATTDVTDGDGVKIGERSKLPY 114 24488899*********8332333344478999998888873333455999999****************************** PP NAM 109 ykgrapkgektdWvmhey 126 + g +tdW+m+e Oropetium_20150105_11009A 115 K----KGGLSTDWLMDEV 128 8....568899****995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.35 | 1 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-10 | 33 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MPVNQRETIW NWNPAAKPKD RITTENVRHN HQSFASWEVY ACEPGVLXXX XXXXXXXGDR 60 FFFTTTCKRQ PQEAGKSVRA HRAAGPGSWY SHSATTDVTD GDGVKIGERS KLPYKKGGLS 120 TDWLMDEVSS CHPGTVVGGD RQYVFCKMYV SLRAAADSAA RQESDAXXXX XXXXXXXPPP 180 VEPAVATPNK RSAQAPPIVA PPRKRIRGAA ANTTADPYKT SVVVVPTPPE DPAVTAPNKR 240 SAPPMMIAKT QCGKRVRGAP VAPTLPPPPA GFATPLPSPR PGTPGSDTIP TTLQPGRSPA 300 PAAPRPSCQQ QPPAPLDLLS NEDPAQTEDD DLNQFASLLE DSLEVIEEEH QVPVQAEDEH 360 RAPSTKNQEP SR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_11009A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_11009A |