PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_10923A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Protein Properties

Length: 276aa MW: 30234.3 Da PI: 9.4059

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_10923A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	91	8.8e-29	38	132	1	86
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k ltpsdv+k++rlv+pk++ae++ g+ ++ l +ede g+ W+++++y+ +s++yvltkGW+++vk+++ Oropetium_20150105_10923A 38 FEKPLTPSDVGKLNRLVIPKQHAERYfplvaggsgdvAGE--KGLLLCFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKR 119 99***************************999865434..6779********************************** PP --TT-EEEEEE-S CS B3 74 LkegDfvvFkldg 86 L++gD+v F++++ Oropetium_20150105_10923A 120 LDAGDVVRFERVR 132 ********764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.3E-39	32	154	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.72E-29	36	143	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.50E-28	37	134	No hit	No description
SMART	SM01019	1.1E-22	38	148	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.746	38	148	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-26	38	133	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MAMHPALSHG HPPAWPWGMA MYTNLHYHHH QYEREQLFEK PLTPSDVGKL NRLVIPKQHA 60 ERYFPLVAGG SGDVAGEKGL LLCFEDEAGK PWRFRYSYWT SSQSYVLTKG WSRYVKEKRL 120 DAGDVVRFER VRGSLGVGDR LFIGCRRRGE SAPPPPPVRA PPPALNGGEQ QPWSPMCYST 180 SGSSHPTSPT SSYAHHSDMP HAGTCHCYAT HITESTKEQS TAIIYLPAAA YAISVTIAGE 240 TTTEMIKSSG AASAPSRKLR LFGGQLIGKT TKGSI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-50	33	148	3	113	B3 domain-containing transcription factor NGA1
5os9_B	3e-50	33	148	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_10923A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804861.1	1e-113	B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	3e-95	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A3B6LJ21	1e-113	A0A3B6LJ21_WHEAT; Uncharacterized protein
STRING	Traes_5BL_B98E347A8.1	1e-114	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	4e-58	B3 family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_10923A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]