PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10838A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 429aa    MW: 46959.5 Da    PI: 6.2522
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10838AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.4e-07185206223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                 C +Cgk F+r  nL+ H+r H
  Oropetium_20150105_10838A 185 FCAICGKGFKRDANLRMHMRGH 206
                                6*******************98 PP
2zf-C2H211.20.0011303317620
                                TTEEESSHHHHHHHH CS
                    zf-C2H2   6 CgksFsrksnLkrHi 20 
                                Cg+sFsrk+ L  H 
  Oropetium_20150105_10838A 303 CGTSFSRKDKLFAHV 317
                                **************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.78E-5182209No hitNo description
SMARTSM003550.012184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.884184211IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5185235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
SMARTSM0035564233266IPR015880Zinc finger, C2H2-like
SMARTSM0035534271293IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDWNPGTMLD NLTFIEEKIH QVKDVIRTML DNGGQQPCHS ADMAWQQQAV NADLTCLIVQ  60
LISTAGSLLP SLKNSSFLSH PPAGHMDVSN HVGSSSNMVP NVIATSELNK EKTCISEDYV  120
ELLKELTDGT ADGGIEIDNV LVEEQGRKDG DEGGDAGMDG DNLPPDSYEL LQPERDEILA  180
PHTHFCAICG KGFKRDANLR MHMRGHGDEY KSPAALAKPP RDASTEHSLV KRYSCPFVGC  240
KRNKLHDNFQ PLKTILCVKN HYKRSHCEKR YTCSRCHTKK FSVLADLKTH EKHCGRDKWL  300
CSCGTSFSRK DKLFAHVALF QGHTPALPSE DPKASSDQAD PLGSQQEQAK PTSSMGSFMW  360
GGNSLGNDSA LDVKGFDGCS NDFLSTANYG SFNFSFGHLD EFVGTPSEGS FSVMPSDHFQ  420
SAEKKGGN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10838A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977257.10.0zinc finger protein STAR3
SwissprotQ943I61e-142STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0A9JGB10.0A0A0A9JGB1_ARUDO; Uncharacterized protein
STRINGSi010000m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-131C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]