PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10818A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 182aa MW: 20107.9 Da PI: 9.6532 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++ +G g+W++ ++ g+ R++k+c++rw +yl Oropetium_20150105_10818A 14 KGAWTKEEDQRLVAYIRAHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.7e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE + ++++++ lG++ W++Ia++++ gRt++++k++w+++ Oropetium_20150105_10818A 67 RGNFTDEEVDTIIKLHQILGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.504 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.92E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.718 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.67E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIR AHGEGCWRSL PKAAGLQRCG KSCRLRWINY 60 LRPDLKRGNF TDEEVDTIIK LHQILGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLIACG 120 IDPQTHRPLR VSAAAAATAR TSGQLETRTS CSPASSSDED SMPAQHLAGS IDLNLSLSLS 180 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10818A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156905 | 1e-138 | AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene). | |||
GenBank | EU963911 | 1e-138 | EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds. | |||
GenBank | HQ858692 | 1e-138 | HQ858692.1 Zea mays clone UT1148 ZmMYB8 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977234.1 | 2e-97 | myb-related protein Zm38 | ||||
Swissprot | Q9SZP1 | 8e-86 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | K3YA56 | 4e-96 | K3YA56_SETIT; Uncharacterized protein | ||||
STRING | Si011098m | 6e-97 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-85 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10818A |