PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_10805A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 489aa MW: 53377.6 Da PI: 5.7733

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_10805A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	27.9	6.7e-09	7	87	1	73
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkr 73 lppG+ F+P+ ee v eyLk+ +++ ++ ++ vd+y + P +L++ +++ ++wyf + r ++ gkr Oropetium_20150105_10805A 7 LPPGVYFNPSPEECVREYLKPWIASGCdmrtPATHGAVFPVDVYAHGPGELQRmfppgYARGFGRRWYFLTLRPSRRD-GKR 87 79******************9987766543344569999******854777655566789*999887654.444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-14	5	137	IPR003441	NAC domain
PROSITE profile	PS51005	11.296	7	170	IPR003441	NAC domain
Pfam	PF02365	4.2E-5	8	106	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MATPAPLPPG VYFNPSPEEC VREYLKPWIA SGCDMRTPAT HGAVFPVDVY AHGPGELQRM 60 FPPGYARGFG RRWYFLTLRP SRRDGKRRNY GFHLRDGSKT PWLMEELTAD DSDGGGGEGE 120 GGEGERRVPV LCRIYVSPHA DVKDRRAILG EGGVPVDRNG KAKPLRVVVR DDDYFRQLAA 180 RLPPSYVRRV CRDDGAASQP LGGFGHQGDH VVAPPGGFGH QAAGHVVAPP GGFGHQSAGH 240 VTMLPGCFGH QAAGQVVALP GAFGHQATGN VHAQAALPQD VLVDQHGFQA VHPHGPVTPP 300 AVRALYNAQH KHELPADVLF HDHGHNAALD YLPAPPVHVD DAPQDDEDEV HREKKKKPRL 360 TTRPPTRTSS AHAQIDATKE PATRPPPPPL HVDDDALLLL PRPPAVEFDA WELPPQELLS 420 LLSGGSMEEY LSNLTHEWCC DDNFGKACER LLFLFDDGIM DPDVYDDDTF TYEDLSKLGD 480 DSWIDECE*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MATPAPLPPG VYFNPSPEEC VREYLKPWIA SGCDMRTPAT HGAVFPVDVY AHGPGELQRM  60
FPPGYARGFG RRWYFLTLRP SRRDGKRRNY GFHLRDGSKT PWLMEELTAD DSDGGGGEGE  120
GGEGERRVPV LCRIYVSPHA DVKDRRAILG EGGVPVDRNG KAKPLRVVVR DDDYFRQLAA  180
RLPPSYVRRV CRDDGAASQP LGGFGHQGDH VVAPPGGFGH QAAGHVVAPP GGFGHQSAGH  240
VTMLPGCFGH QAAGQVVALP GAFGHQATGN VHAQAALPQD VLVDQHGFQA VHPHGPVTPP  300
AVRALYNAQH KHELPADVLF HDHGHNAALD YLPAPPVHVD DAPQDDEDEV HREKKKKPRL  360
TTRPPTRTSS AHAQIDATKE PATRPPPPPL HVDDDALLLL PRPPAVEFDA WELPPQELLS  420
LLSGGSMEEY LSNLTHEWCC DDNFGKACER LLFLFDDGIM DPDVYDDDTF TYEDLSKLGD  480
DSWIDECE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_10805A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13570	17	24

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_10805A