PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_10668A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Nin-like

Protein Properties

Length: 286aa MW: 30349 Da PI: 5.0981

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_10668A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	66.9	3.2e-21	227	273	2	48
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 e++++l+d+s+yF+lp+++A+keLgvc+TvLK R +GI+RWPhRk Oropetium_20150105_10668A 227 ENKLELHDISRYFHLPMAKACKELGVCATVLKGLRRTFGIERWPHRK 273 6899******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.163	213	285	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-18	230	274	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MAAHNGNDGS AAEGQWPYNP LLVLDGCDFD GVHAPGSGGL DFLGGLYFPP PMQNVTTDAY 60 GGNAFEWTEL PGNGAYSTTA NGSAPPTAAG TTIISAAASP TPPSAAQKGA LDCTAGCQIL 120 REIVHSNGLD ETTKLCPGLF YHATLEVSHA NNPEGLAPAP SFMGRDYAWV RNYLMNYAQE 180 RAAGGYTIVH DSISDFVSVL CTSMASAGID DQRHEVEAAP AEAEKGENKL ELHDISRYFH 240 LPMAKACKEL GVCATVLKGL RRTFGIERWP HRKAMITIKD NWTSC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_10668A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2T8KHA6	2e-39	A0A2T8KHA6_9POAL; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	4e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_10668A