PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10667A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | Nin-like | ||||||||
Protein Properties | Length: 342aa MW: 36689.9 Da PI: 4.8535 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 67.7 | 1.8e-21 | 291 | 337 | 2 | 48 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +k+++l+d+s+yF+lp+++A+keLgvc+TvLK R +GI+RWPhRk Oropetium_20150105_10667A 291 TKKLELHDISRYFHLPMAKACKELGVCATVLKGLRRTFGIERWPHRK 337 799*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.198 | 281 | 341 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.3E-18 | 294 | 338 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MAANGGDNNN HGYYEGQWPF DPLNMVPGDF DDDVIHLLDV PGGLYSPPAA PPPLQNVVGN 60 NCSYGGDPLD LVPVPGSNDT SAPQAAGGGT PAMAGPSTSA HRQDDDASSS YVHQGAQLDC 120 TGCQILREVM HTNGFETTKF CIHGAAAQFY HATVEVYHAN PDGFALAPTH QFFVDFMDRD 180 YAWVKHYLMV YAQHRAAGGC TVVHDSTSDF IDALCTTMPG GALLEDRREA PAQAAEAETG 240 AEVSAASAGD DVVKPIIIGQ EEMPLEESPV HIKDATFNVN STEVPANRER TKKLELHDIS 300 RYFHLPMAKA CKELGVCATV LKGLRRTFGI ERWPHRKSAG L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10667A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321666.1 | 2e-61 | uncharacterized protein LOC8084238 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8055 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 3e-10 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10667A |