PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10577A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | GATA | ||||||||
Protein Properties | Length: 227aa MW: 24719.2 Da PI: 10.8127 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 44.2 | 2.6e-14 | 192 | 225 | 1 | 32 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 C Cg + Tp++Rrgpdg++tLCnaCG+ yrk Oropetium_20150105_10577A 192 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRK 225 6667777777***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48208 | 7.56E-6 | 31 | 145 | IPR008928 | Six-hairpin glycosidase-like |
Gene3D | G3DSA:1.50.10.10 | 6.4E-5 | 32 | 54 | IPR012341 | Six-hairpin glycosidase |
SuperFamily | SSF57716 | 3.56E-9 | 188 | 225 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-10 | 191 | 225 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.4E-12 | 192 | 225 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVPDLASILC RRARRCVCVP PRLLPVRSRS RGDGDSDNYC WQRPEDMTTS RPAYPAVRVR 60 RQVIQGPVQR QRRRRTRRRP AGTAARAAMG GAVAALRHGP ARVPRIRGRQ DDNADESGGT 120 GWAVSELSWD IKYAGLQVLA THSQGCDAMM HMLVAPDGGG GELQPFTAQP AEQVLELHRD 180 NAADGLEGHV RCLRCGISGN ATPHMRRGPD GPRTLCNACG IAYRKV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 72 | RQVIQGPVQRQRR |
2 | 69 | 76 | RQRRRRTR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10577A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15039 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 2e-11 | GATA-type zinc finger protein with TIFY domain |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10577A |