PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10433A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 28895 Da PI: 4.8262 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.5 | 3.4e-09 | 14 | 60 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqc 40 rg W++eEd++l + ++++G g+W+++++ Rt+ +c Oropetium_20150105_10433A 14 RGLWSPEEDDKLMNHIAKYGHGCWSSVPKLADelnseliSDRTAGHC 60 788*************************9988766666666666666 PP | |||||||
2 | Myb_DNA-binding | 27.2 | 9e-09 | 63 | 87 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47 ++W+ Ia+ ++ gRt++++k++w++y Oropetium_20150105_10433A 63 NRWSQIAAQLP-GRTDNEVKNFWNSY 87 35*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.404 | 9 | 92 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-13 | 9 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.72E-14 | 12 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 13 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-8 | 14 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.23E-11 | 17 | 88 | No hit | No description |
Pfam | PF00249 | 8.3E-7 | 63 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-12 | 63 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MARRAAGPKK KLRRGLWSPE EDDKLMNHIA KYGHGCWSSV PKLADELNSE LISDRTAGHC 60 TMNRWSQIAA QLPGRTDNEV KNFWNSYIKK KLRQRGIDPA THKPLAVVEA SSSSCRTASA 120 AVFMDPEAAE LILSSAGLHM PPPPPESYMM MYGGRSSADD GGADPVACSD GSLSLSSGCN 180 QTADDDLEAA AAGGYLDPVD DALVPAAAVV LPSVSSSSTL NSMAGLSTAT ATTTTTDNSS 240 GFESTPSYST DHLASYQQGG QCIYGGDDVN KDAAV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10433A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF470066 | 6e-41 | AF470066.1 Sorghum bicolor P-type R2R3 Myb protein (Myb27) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802131.1 | 4e-70 | transcription factor MYB61-like | ||||
TrEMBL | A0A2S3H4C1 | 1e-68 | A0A2S3H4C1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EZ41 | 9e-69 | A0A2T7EZ41_9POAL; Uncharacterized protein | ||||
STRING | Si029872m | 1e-62 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 4e-39 | myb domain protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10433A |