PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10199A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 924aa    MW: 101761 Da    PI: 6.7973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10199AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.9e-19362461198
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 
                                f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v
  Oropetium_20150105_10199A 362 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTV 444
                                99**************************555567778***************9989999999***9.***************** PP

                                EEEE-SSSEE..EEEEE- CS
                         B3  81 vFkldgrsefelvvkvfr 98 
                                +F++++  +++lv+++++
  Oropetium_20150105_10199A 445 TFSRIE-PGGKLVMGFRK 461
                                ***887.77777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-31354471IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-21359462IPR015300DNA-binding pseudobarrel domain
CDDcd100175.94E-24360461No hitNo description
SMARTSM010191.5E-22362462IPR003340B3 DNA binding domain
PfamPF023624.7E-16362461IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589362463IPR003340B3 DNA binding domain
PROSITE profilePS5105014.99623673IPR011124Zinc finger, CW-type
PfamPF074964.2E-12628670IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 924 aa     Download sequence    Send to blast
MAGVVAKRCM NPVCGAPAPP GGGGGDWRKG WPLRSGGFAL LCDKCGLAYE QLVYCDIFHQ  60
KESGWRDCSF CGKRLHCGCI ASKTSYDLLD GGGVQCVACM KNSAAQSASG QVVVPNLFPC  120
QSNLRFLGKS DELLLGRKFE QSPSIMVDPR NDDITVINRH NHPFMLRNME VGQSSSILRQ  180
KEIENGSRPI KWEQSTLSIG DMGRMPFLTR NQSALDSPQC VRRDDSKDPN TDSTTSESLS  240
EACLSMSLGI ANNGSKMEAT STIQRPMQSP TTAIAEGREL TTSSSPFQHA QRARHFLTRP  300
PRVGEGAAFD PTRDVFSHLR VARPPAEGRG RNQLLPRYWP RITDQELQQI SGDSNSTIVP  360
LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGRPLT IQDARGKEWH FQFRFWPNNN  420
SRMYVLEGVT PCIQSLQLQA GDTVTFSRIE PGGKLVMGFR KATNTVSLPD SQISAIANGS  480
LLSETLFSNA NENLSVVSGY PGFLQSIKGA ADLHSSSQYD HHVNSADGDV SWLKTDKFGS  540
RPDEGSLQFL QKRSRNIGSK SRRFLMDAED ALELKLTWEE AQELLRPAPT AKPNIVMIED  600
YEFEEYDEPP VFAKRSIFTI RATGEQDQWI QCDDCSKWRR LPLNIIIASK WTCTDNSWDP  660
KSCSCSAPEE LTPKELQTVL QQYEEMRRRK GINYGGLKLN VAEMDGSGLD ALATAAVYGD  720
VVGNQGSPSV ATTTKHPRHR PGCTCIVCIQ PPSGKGPKHN PSCTCNVCMT VKRRFKTLMM  780
RKKQRQSERE EAEASKKIQW VNRDEPEGSS LSRSPQTLDT TRDSDVTMLD KVAEMNKGHI  840
DLNFHPTPLA TRPLENYMKQ NGLTSLASEQ GGSPGTGTAP PAPVESEERA SNENREEQEP  900
EAMAVDEAGE NQNDKAADDA PAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C6e-673404641125B3 domain-containing transcription repressor VAL1
5yzz_C6e-673404641125B3 domain-containing transcription repressor VAL1
5z00_C6e-673404641125B3 domain-containing transcription repressor VAL1
5z00_G6e-673404641125B3 domain-containing transcription repressor VAL1
5z00_K6e-673404641125B3 domain-containing transcription repressor VAL1
5z00_M6e-673404641125B3 domain-containing transcription repressor VAL1
6j9a_A5e-673404642126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1771782KRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10199A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958699.10.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLK3ZQF40.0K3ZQF4_SETIT; Uncharacterized protein
STRINGPavir.Ba00225.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-179HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]