PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10176A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 375aa MW: 39837.6 Da PI: 4.5811 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 125 | 6.3e-39 | 16 | 123 | 1 | 108 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeel+ +yL++++++ ++++ ++i++vdiyk++PwdLp k+ ++ ewyfFs+rd+ky++g r+nra+ sgyWk Oropetium_20150105_10176A 16 LPPGFRFHPTDEELILHYLRNRAASMPCPV-DIIADVDIYKFDPWDLPCKAVYGDGEWYFFSPRDRKYPNGIRPNRAAGSGYWK 98 79****************************.99***************66666789**************************** PP NAM 85 atgkdkevlsk.kgelvglkktLvf 108 atg+dk+v ++ +ge vg+kk Lv Oropetium_20150105_10176A 99 ATGTDKPVRDTcTGESVGVKKALVI 123 *********9989999*******95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-50 | 10 | 145 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.454 | 16 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-18 | 17 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MSSSSAAPAA TSPQQLPPGF RFHPTDEELI LHYLRNRAAS MPCPVDIIAD VDIYKFDPWD 60 LPCKAVYGDG EWYFFSPRDR KYPNGIRPNR AAGSGYWKAT GTDKPVRDTC TGESVGVKKA 120 LVIDNDFFGM CVQLDDWVLC RIYKKSGQAL PTTMMVPPLA DYDRLMDDDH DEHLLLAAGG 180 GFDNNIYSSN SFVYAPTSSD DGTTCSVNTT TQQQQQPAAL SKIPSISDLI VDDYALAQIL 240 DTAVPPDDAD LLHAPFAMHP SLNQLLAVGG DTSAHSSESE ELIYSSSAAY YYPAAGGAAG 300 VAKREASSPN ECVGGGDGGA GNILGLGNPP PPAKRLRAAY APPPASGLLL PPATPSSSQV 360 LGGLNHNSML LRQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-52 | 10 | 148 | 9 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10176A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728029 | 1e-101 | KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958721.1 | 1e-110 | NAC domain-containing protein 48 | ||||
TrEMBL | K3ZUI6 | 1e-108 | K3ZUI6_SETIT; Uncharacterized protein | ||||
STRING | Si030267m | 1e-109 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-58 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10176A |