PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_10156A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 35443.7 Da PI: 6.2515 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.7e-18 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+llv++++ +G g+W++ ar g++Rt+k+c++rw++yl Oropetium_20150105_10156A 31 RGPWTVEEDLLLVNYIAAHGEGRWNALARGAGLKRTGKSCRLRWLNYL 78 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.2e-16 | 84 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Oropetium_20150105_10156A 84 RGNMTAQEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 127 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.826 | 26 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-30 | 29 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-17 | 31 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-22 | 32 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.46E-11 | 33 | 78 | No hit | No description |
PROSITE profile | PS51294 | 23.467 | 79 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-15 | 83 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 84 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 86 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.40E-11 | 86 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MKKMAAARDQ RREISMSSED ESSPVSGDLR RGPWTVEEDL LLVNYIAAHG EGRWNALARG 60 AGLKRTGKSC RLRWLNYLRP DLRRGNMTAQ EQLLILELHS RWGNRWSKIA QHLPGRTDNE 120 IKNYWRTRVQ KHARQLNCDV NSQQFKDLMR YLWMPRLLER INNSSSSSLS DDGGVLTPPP 180 PPPQQQLPVP AAWSADDEAH LALLANNEAE LSSSATAASS SSVSTDGVTK QQQPLVSNAG 240 DWSSCYQPPQ TTMTGYPLPA ATHQFGAAGE TCWSDEVYSP AGLSAPAGVV YGGDMAAWPD 300 LGETMWGTDD LWYTQIMGCL * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 28 | 131 | 4 | 106 | B-MYB |
1h8a_C | 6e-24 | 28 | 131 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_10156A |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK120551 | 1e-149 | AK120551.1 Oryza sativa Japonica Group cDNA clone:J013130B13, full insert sequence. | |||
GenBank | CT830663 | 1e-149 | CT830663.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H09, full insert sequence. | |||
GenBank | JF951909 | 1e-149 | JF951909.1 Triticum aestivum clone TaMYB26 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802225.1 | 1e-114 | transcription factor MYB2-like | ||||
Swissprot | Q10MB4 | 9e-93 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A1E5VNG4 | 1e-116 | A0A1E5VNG4_9POAL; Transcription factor MYB108 | ||||
STRING | Si030584m | 1e-109 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G48000.1 | 2e-80 | myb domain protein 112 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_10156A |
Publications ? help Back to Top | |||
---|---|---|---|
|