PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10144A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 232aa MW: 25279.4 Da PI: 9.9397 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.5 | 1e-16 | 168 | 210 | 5 | 47 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe k+++L++eN++L+k Oropetium_20150105_10144A 168 RRQKRMIKNRESAARSRARKQAYTNELEIKIAKLQEENDRLRK 210 79*************************************9994 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.0E-11 | 164 | 224 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.013 | 166 | 210 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 4.79E-24 | 168 | 213 | No hit | No description |
Pfam | PF00170 | 8.3E-13 | 168 | 210 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.7E-13 | 168 | 212 | No hit | No description |
SuperFamily | SSF57959 | 1.31E-10 | 168 | 214 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 171 | 186 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MASRGVAGSG SLSRQGSVYS LTLTEVETQL GEPLRSMNLE DLLRTVLPAA AAEATPGKKT 60 VDEVWRDIQN ASAGRHPTMA EMTLEDFLSR AGVNTAADGG PHWLHHNQYQ QQQQQYAPPV 120 GVVAGPPPSL YCDAGSGSGG GGGGFLSSQL VSGRKRDAEG VVEKTVERRQ KRMIKNRESA 180 ARSRARKQAY TNELEIKIAK LQEENDRLRK LKKYLAWHDV SKHTATERFI L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10144A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033247 | 3e-45 | BT033247.1 Zea mays full-length cDNA clone ZM_BFb0124H20 mRNA, complete cds. | |||
GenBank | BT035906 | 3e-45 | BT035906.1 Zea mays full-length cDNA clone ZM_BFb0087N11 mRNA, complete cds. | |||
GenBank | BT055475 | 3e-45 | BT055475.1 Zea mays full-length cDNA clone ZM_BFb0325H08 mRNA, complete cds. | |||
GenBank | EU975790 | 3e-45 | EU975790.1 Zea mays clone 500961 EEL mRNA, complete cds. | |||
GenBank | KJ728208 | 3e-45 | KJ728208.1 Zea mays clone pUT6484 bZIP transcription factor (bZIP92) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183813.1 | 2e-75 | ABSCISIC ACID-INSENSITIVE 5-like protein 3 | ||||
Swissprot | Q9C5Q2 | 9e-54 | AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3 | ||||
TrEMBL | A0A3L6QU58 | 7e-78 | A0A3L6QU58_PANMI; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
STRING | Pavir.Ba00263.1.p | 2e-74 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4441 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41070.3 | 2e-49 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10144A |
Publications ? help Back to Top | |||
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