PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09933A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 451aa    MW: 49972.2 Da    PI: 6.2437
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09933AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.97.6e-117534452374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklf 84 
                                ++lLl            +a+a+L+++  la+pdgd+mqR+aa f+eALa+r +r +++l++al  p++t+  + +e +aa++ f
  Oropetium_20150105_09933A  53 IHLLLXXXXXXXXXXXDAANAALEHIAALAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRATP--TAAEFAAARRHF 134
                                67788888888888899*********************************************95555554..689999****** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                                +e++P+l+++  + Nq Ilea+e+e+ vH++D++    +QW+ Ll+ La+Rpegpp+lR+T+v +    +k+ l +t+  L+k 
  Oropetium_20150105_09933A 135 FELCPFLRLAGAAVNQSILEAMESEKIVHVVDLGGADATQWLELLHLLAARPEGPPHLRLTAVCE----HKDVLTQTATVLTKE 214
                                *****************************************************************....9************** PP

                       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll..........................desvsleserde 226
                                Ae+l+vpf+fn+ v++rl++l++e+Lrvk+gEala+ ++lqlh ll                          +   +++s+ d+
  Oropetium_20150105_09933A 215 AERLDVPFQFNP-VVTRLDALDVESLRVKTGEALAITSSLQLHCLLasdddttgkdnnknnskdsnrrgspeSGLSPSTSRADA 297
                                ************.79*****************************************************997522233444789* PP

                       GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310
                                +L ++++lsPkv+vv+eqea+hn++ + erf+eal+yy+alfd+le+            Er +lg+ei+n+vac gaerrerhe
  Oropetium_20150105_09933A 298 FLGALWGLSPKVMVVTEQEASHNAAALTERFVEALNYYAALFDCLEVXXXXXXXXXXXXERWMLGEEIKNIVACDGAERRERHE 381
                                *************************************************999******************************** PP

                       GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +l +W +r+e aGF+ vpls++a  qa+++ +  + dg++v ee+gs++l+W+dr+++svSaWr
  Oropetium_20150105_09933A 382 QLDRWARRMEGAGFGRVPLSYYALLQARRIAQGLGCDGFKVREEKGSFFLCWQDRAIFSVSAWR 445
                                ***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.87626425IPR005202Transcription factor GRAS
PfamPF035142.6E-11453445IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MVHDEGSSSS VTSSPLHNFS TMPLXXXXXX XXXXXXPWLM RELRSDERGL CLIHLLLXXX  60
XXXXXXXXDA ANAALEHIAA LAAPDGDAMQ RVAAAFAEAL ARRALRAWPG LCRALLLPRA  120
TPTAAEFAAA RRHFFELCPF LRLAGAAVNQ SILEAMESEK IVHVVDLGGA DATQWLELLH  180
LLAARPEGPP HLRLTAVCEH KDVLTQTATV LTKEAERLDV PFQFNPVVTR LDALDVESLR  240
VKTGEALAIT SSLQLHCLLA SDDDTTGKDN NKNNSKDSNR RGSPESGLSP STSRADAFLG  300
ALWGLSPKVM VVTEQEASHN AAALTERFVE ALNYYAALFD CLEVXXXXXX XXXXXXERWM  360
LGEEIKNIVA CDGAERRERH EQLDRWARRM EGAGFGRVPL SYYALLQARR IAQGLGCDGF  420
KVREEKGSFF LCWQDRAIFS VSAWRGRRFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-556944736381Protein SCARECROW
5b3h_A2e-556944735380Protein SCARECROW
5b3h_D2e-556944735380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09933A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456925.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-158SCL3_ARATH; Scarecrow-like protein 3
TrEMBLC5XHT90.0C5XHT9_SORBI; Uncharacterized protein
STRINGSb03g045660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-121scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]