PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_09929A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 224aa MW: 25704.8 Da PI: 5.0664 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 26.1 | 2.4e-08 | 31 | 73 | 6 | 48 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 F+Pt++elv ++L+++++g + +++ ++ e+d +++ PwdL Oropetium_20150105_09929A 31 GFDPTEDELVLHFLRPQLRGFPPRVSGAVVEADPCSAAPWDLL 73 6************************999*************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.627 | 26 | 181 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-9 | 30 | 75 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-4 | 30 | 155 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-7 | 122 | 181 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MADEMNLRAX XXXXXXXXXX XXEEEEAEEV GFDPTEDELV LHFLRPQLRG FPPRVSGAVV 60 EADPCSAAPW DLLAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXWCRVKYC FYVRVGEEHG KQQRSTGWVM EEYEITDPTC YRRXXXXXXX XYWVLCRVRK 180 SSRTAAVTLS SPSWSAGSSS ALRKRMLAAG CPVGVEAERF LLF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_09929A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK377068 | 1e-32 | AK377068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3147G02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0A9C0L5 | 5e-53 | A0A0A9C0L5_ARUDO; Uncharacterized protein | ||||
STRING | OPUNC01G42700.1 | 2e-41 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13761 | 25 | 28 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_09929A |