PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_09887A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 508aa MW: 53552.6 Da PI: 8.185 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.7e-05 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Oropetium_20150105_09887A 106 FVCEICHKGFQRDQNLQLHRRGH 128 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00048 | 225 | 243 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++++H + Oropetium_20150105_09887A 225 DCGTVFSRRDSFVTHRAFC 243 9**************8765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.6E-5 | 105 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.18E-6 | 105 | 128 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 106 | 128 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.046 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 160 | 190 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.18E-6 | 190 | 215 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 508 aa Download sequence Send to blast |
MPGAASRECT GSLSSVTDTV REAEEELLHP QQWRFCVINP LMGSPPGIGK HDGDLQRVTG 60 TSGSEPPPAL PLPAAKKKKR SLPGTPDPSA EVIALSPKTL MATNRFVCEI CHKGFQRDQN 120 LQLHRRGHNL PWKLRQRGGG GGGPGDAGSG GTGPPRKRVY VCPEPSCVHH NPARALGDLT 180 GIKKHYCRKH GEKKWKCERC AKRYAVHSDW KAHSKVCGTR EYKCDCGTVF SRRDSFVTHR 240 AFCDALAQEN NRLAQPMNMA TVASALQGQA QQLGLPPSKR ADDDLDAEDD ATEEFGLLDT 300 KSPRLRLLPM PDDSAATPLL PPLGMAGCML SGLGLRSAAA SSSPAFYSGS SKMCLDGPPG 360 DPSGMGFPSA GSASMSATAL LQKAAEMGAT TSGVYGSAGF SSAGFGGGPM VAGPDSFAAM 420 SPFGSVRNGL PLPTQQLVGF DEGGLLPGQI YGGGSMTRAI GSLMHGGQQV DHQRPEDDKR 480 VVDYMGVDDQ SFHGVGLPFV PHMGPWT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-33 | 191 | 258 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 3e-33 | 191 | 258 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_09887A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT066652 | 0.0 | BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817951.1 | 0.0 | protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 1e-104 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2T7DBX2 | 0.0 | A0A2T7DBX2_9POAL; Uncharacterized protein | ||||
STRING | Si001316m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12554 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50700.1 | 9e-99 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_09887A |
Publications ? help Back to Top | |||
---|---|---|---|
|