PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_09503A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 253aa MW: 27490 Da PI: 7.0217 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.7 | 2.5e-35 | 23 | 122 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +Ca+C+++rr+C ++Cvlapyfpa++ ++f++vh++FGasnv+kll++l++e+r +a++slvy+A+ r+ +P G+v+ i+ lq Oropetium_20150105_09503A 23 PCAGCRHQRRRCLSSCVLAPYFPAQDGARFNAVHRVFGASNVSKLLAELRPEDRAEAAESLVYQANERIWEPTMGCVSYISILQ 106 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 + +++++ e+a+++e Oropetium_20150105_09503A 107 NVIQHVEGEVAAAREA 122 *********9999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.943 | 22 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-34 | 23 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MSSSLGEEEE PMTPAAVTTS LTPCAGCRHQ RRRCLSSCVL APYFPAQDGA RFNAVHRVFG 60 ASNVSKLLAE LRPEDRAEAA ESLVYQANER IWEPTMGCVS YISILQNVIQ HVEGEVAAAR 120 EALAGLVGRE AAFRPFDASA ATFEARQEAE VRLARALRFA EEKYGEIRTM ILQRQAAEAA 180 EEKDQMAAAA AQTARRDQTQ MMPQAAAAPK RRKHAVAQHS GVGRGFSDGQ PRQPMMQRME 240 AQESGSSAVA AQA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-30 | 11 | 123 | 3 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-30 | 11 | 123 | 3 | 111 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_09503A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23660.2 | 3e-34 | LOB domain-containing protein 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_09503A |