PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09379A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 162aa    MW: 18063.8 Da    PI: 10.8384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09379AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.5e-07442148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+W++eEd l  + ++++G g       +++  R++ +c+srw++yl
  Oropetium_20150105_09379A  4 KGKWSKEEDYLMRNHIEKHGIG-------RLQ--RCGRSCRSRWLNYL 42
                               79******************99.......777..************97 PP
2Myb_DNA-binding37.36.4e-124992247
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               g++T+ Ed+++ d   + G+  W+ Ia+ ++ gRt+  +k++w++ 
  Oropetium_20150105_09379A 49 GNFTPAEDKIICDMYSKRGSC-WSVIAAQLP-GRTDLAIKNYWNST 92
                               89*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.334142IPR017930Myb domain
SMARTSM007170.0022344IPR001005SANT/Myb domain
SuperFamilySSF466897.81E-23389IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-13549IPR009057Homeodomain-like
CDDcd001674.05E-5642No hitNo description
PROSITE profilePS5129418.9014397IPR017930Myb domain
SMARTSM007174.0E-104795IPR001005SANT/Myb domain
PfamPF002492.5E-104992IPR001005SANT/Myb domain
CDDcd001673.62E-75093No hitNo description
Gene3DG3DSA:1.10.10.607.3E-225096IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MMKKGKWSKE EDYLMRNHIE KHGIGRLQRC GRSCRSRWLN YLRPGLKHGN FTPAEDKIIC  60
DMYSKRGSCW SVIAAQLPGR TDLAIKNYWN STLKKRFPAA RTSAAAAAHR KPRPSPTSST  120
SSDAGTPSGT TIFGASTCIL RELNSRAKMG LDNKTEMLRC N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-2329725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09379A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661280.12e-62transcription factor RAX2
SwissprotF4JSU07e-38MYB87_ARATH; Transcription factor MYB87
TrEMBLA0A368SIM74e-61A0A368SIM7_SETIT; Uncharacterized protein
STRINGSi037244m1e-57(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.14e-39myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]