PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_09207A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25362.8 Da PI: 10.6738 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 23.7 | 1.4e-07 | 63 | 133 | 56 | 126 |
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmhey 126 ++yf++++++ + +r g+W ++gk+ke ++ +++ ++k+ L ++ + +++ ++ Wvmhe Oropetium_20150105_09207A 63 LKVYFYVRTKHVAL---PDRRCDGGGTWVSQGKKKESDKElvvsgGEKINWTKRNLNLHME--EHSGSCGWVMHEH 133 46899999877654...57788899*******97776555555557777899*******43..33449******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 9.9E-5 | 60 | 133 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.72E-7 | 62 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSSPAVPLIV KLTTXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXP 60 KDLKVYFYVR TKHVALPDRR CDGGGTWVSQ GKKKESDKEL VVSGGEKINW TKRNLNLHME 120 EHSGSCGWVM HEHFINASPS LKIYSISFTG HGQKRKRAAE DDGADEPEAQ HLRVDVASAV 180 GDSGFLPALA LGRPPRERPQ IKTRTRRRRS SSTVMLLLKT ISQR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_09207A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8717 | 9 | 46 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_09207A |