PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_09144A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 30032.1 Da PI: 10.5551 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 19 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed++l+++v ++G+ +W++Ia+++ gR++k+c++rw++ Oropetium_20150105_09144A 19 RGHWRPGEDQKLKELVDKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 64 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 61.6 | 1.7e-19 | 72 | 115 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ + Oropetium_20150105_09144A 72 RPFTEEEEERLLAAHRVHGNK-WALIARHFP-GRTDNAVKNHWHVV 115 69*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.786 | 14 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-30 | 17 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 18 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 19 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 20 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-13 | 22 | 63 | No hit | No description |
PROSITE profile | PS51294 | 28.601 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-17 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 71 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 73 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-8 | 82 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MASSSTTSDG GAKSSSCPRG HWRPGEDQKL KELVDKYGPQ NWNSIAEKLE GRSGKSCRLR 60 WFNQLDPRIN KRPFTEEEEE RLLAAHRVHG NKWALIARHF PGRTDNAVKN HWHVVMARRS 120 RERSRLLARA AHSPSSXXXX XXXXXXXXXS FCFGFSSKTS SIGSSGGMFG SSPAANRSTP 180 FFRSYGGTSG RGTGATFEAA GRYSYGGGNK QQAAPPLSIT FSSPKDALAM DLGHGLHASN 240 DVSKRDQYNV DAGDETPSTR KGVPFFDFLG VGVSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-32 | 19 | 119 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_09144A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092853 | 1e-110 | FP092853.1 Phyllostachys edulis cDNA clone: bphyem102e11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169060.1 | 1e-108 | myb domain protein 69 | ||||
TrEMBL | A0A3L6F7P7 | 1e-107 | A0A3L6F7P7_MAIZE; Transcription factor MYB105 | ||||
TrEMBL | C0PBK6 | 1e-107 | C0PBK6_MAIZE; Myb domain protein 69 | ||||
STRING | Si026751m | 1e-104 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73410.1 | 3e-57 | myb domain protein 54 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_09144A |