PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08823A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 362aa    MW: 37821.3 Da    PI: 5.1222
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08823AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10145189655
                                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  Oropetium_20150105_08823A 145 IVSERKRRVRMKEKLYELRALVPNI-----TKMDKASIIADAVVYVKNLQ 189
                                568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.29E-13136189No hitNo description
SuperFamilySSF474591.13E-14136206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.129139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15141206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-8145189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEHDLLQLLH LPPQDHLMVS SGFFGVAGGG GPVHMPAGSD DAAVLSGLDD CGWMEDLMDL  60
GDELFGGADD ANTAAVITGD HQYGGGGGSD SYSEDRPPSI SLDDVDGGDG SPPNSVEQGA  120
ASGEHEQDDV SGAATRKRRD RSKTIVSERK RRVRMKEKLY ELRALVPNIT KMDKASIIAD  180
AVVYVKNLQS HAVKLKEEVA ALEARPRSAS GRQQQDAAAG RHNRQQGRXX XXXXXXXXXG  240
RSTAGPAGAR VTHVGATQVG DGSFFVTVEC ERQRDGGGGG GGVAAPLCAA IESLACFVRV  300
ESSSLGRSGP DRVVSTHVLK ASDQLGNAAT TTIGEGTVKL WMLAALLKEG FQPEATADIS  360
C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136151KRRDRSKTIVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08823A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825747.11e-114transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A3L6PRK61e-114A0A3L6PRK6_PANMI; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRINGPavir.J29678.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.17e-40FER-like regulator of iron uptake