PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_08802A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 188aa MW: 19746.3 Da PI: 8.9755 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.8 | 7e-12 | 100 | 146 | 39 | 87 |
EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + +grsW++++ +++++ l++GW++F+ +ngL+ gD +vF+l ++ Oropetium_20150105_08802A 100 LTWRGRSWDMRF--TGGRQIQRLEAGWRGFALDNGLRLGDGCVFELLDN 146 56689*******..9999999************************8654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-14 | 69 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-13 | 69 | 166 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.67E-11 | 71 | 164 | No hit | No description |
Pfam | PF02362 | 5.5E-9 | 99 | 146 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.575 | 103 | 166 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence Send to blast |
MASDSNTAVN PRSLISCGTA GTSKRKAVAN SAEINSGEDA VAAGAPSGPD LQLVPKDTSY 60 ADRIKPLSGK PYFTCVMCKS HVVPRSLAPF LPSSMVPAVL TWRGRSWDMR FTGGRQIQRL 120 EAGWRGFALD NGLRLGDGCV FELLDNGAAD QGGGTVRFSV QVLRASIPSA IRERAGGYTS 180 SSPIEID* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_08802A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU952408 | 3e-48 | EU952408.1 Zea mays clone 1279890 mRNA sequence. | |||
GenBank | EU954164 | 3e-48 | EU954164.1 Zea mays clone 1457632 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975400.1 | 2e-62 | B3 domain-containing protein Os04g0386900 | ||||
Swissprot | Q7XLP4 | 6e-58 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A0A9HBU5 | 2e-64 | A0A0A9HBU5_ARUDO; Uncharacterized protein | ||||
STRING | Si012575m | 1e-60 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_08802A |
Publications ? help Back to Top | |||
---|---|---|---|
|