PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08692A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 348aa    MW: 38558.3 Da    PI: 8.885
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08692AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP123.49.7e-39118197178
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETT..EEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsg..leqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                +Cqv+gC+adls+ak+yhrrh+vCe+hskap v++s   + qrfCqqCsrfhe++efD+ k+sCr+rLa+hn+rrrk+++
  Oropetium_20150105_08692A 118 CCQVDGCTADLSKAKRYHRRHRVCEHHSKAPIVITSRaiMPQRFCQQCSRFHEVDEFDDMKKSCRQRLADHNRRRRKPKP 197
                                6********************************98763368************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114128.632116195IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.9E-30116182IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.24E-34117199IPR004333Transcription factor, SBP-box
PfamPF031102.5E-30119194IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDEQLASNSF PRFEQIGSSV DMEVNVPCLL APPASNSTAD YIISHYGHEH NILHQFYPFA  60
AGNPYDHFFT LVDENMANFG ATPSYAPLGL SYGDYRGYYF PPTRGGYAYG YTSPPLRCCQ  120
VDGCTADLSK AKRYHRRHRV CEHHSKAPIV ITSRAIMPQR FCQQCSRFHE VDEFDDMKKS  180
CRQRLADHNR RRRKPKPSST DVPLKKRAHA KKRSATKDEA SSSRKKGTGN VSGTHAQLGS  240
KSKEQDRSMG LGEAVRESAV VDPKGKAPMM KQLQARVPEP NLIDQGIPLA SWSGNSACLL  300
SSQTTATGAT SNIVQESAGL ALHNQHYHQQ GNILQLGHAM FDLDFDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28113194584squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177194KKSCRQRLADHNRRRRKP
2189206RRRRKPKPSSTDVPLKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08692A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.13e-84protein LIGULELESS 1
SwissprotQ01KM74e-79SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A3S6H5M96e-89A0A3S6H5M9_9POAL; Squamosa-promoter binding protein-like protein (Fragment)
STRINGSi022315m1e-83(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.23e-31squamosa promoter binding protein-like 4