PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08644A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 278aa    MW: 30540.7 Da    PI: 11.7598
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08644AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.12.5e-32571581101
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 
                                aCaaC++ rr+C+++C lapyfpa++p +f+ +++lFG++ +++ll+a+ +   r + m++++yeA  r +dPv+G+ gv+++l
  Oropetium_20150105_08644A  57 ACAACRHRRRRCEPQCLLAPYFPASEPDRFRDARQLFGVKSMVRLLRAAGPAArRVQCMRTIMYEAVLRRQDPVRGCRGVVRDL 140
                                7***********************************************95555499**************************** PP

                     DUF260  84 qqqleqlkaelallkeel 101
                                + +l+ + +ela++++++
  Oropetium_20150105_08644A 141 EGRLRDAFTELATVRRQI 158
                                ************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.77156158IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3057155IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSSSSSPPRA SPPPPSPSGA TASTQASPSS PSRXXXXXXX XXXXXXXXXP PPTDVAACAA  60
CRHRRRRCEP QCLLAPYFPA SEPDRFRDAR QLFGVKSMVR LLRAAGPAAR RVQCMRTIMY  120
EAVLRRQDPV RGCRGVVRDL EGRLRDAFTE LATVRRQIDD ELHRRDRGGA AAARDDDLVH  180
VPPAPANDVP HHGAGPSFFS HFSPKRPQEQ QTFGPIAYYT RECVTLCGVR GGMARPLPRR  240
RRPVTAHAHR PPRGSRGAGS TPLRYARVNF GSWVSGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-165615810111LOB family transfactor Ramosa2.1
5ly0_B3e-165615810111LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08644A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-12LOB domain-containing protein 22