PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08542A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 356aa    MW: 38782.1 Da    PI: 7.356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08542AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-184693148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT +Ed++lv++++++G g+W++ ar  g++Rt+k+c++rw++yl
  Oropetium_20150105_08542A 46 RGPWTVDEDLILVNYIAEHGDGRWNALARAAGLKRTGKSCRLRWLNYL 93
                               89********************************************97 PP
2Myb_DNA-binding51.81.9e-1699142146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg +T++E++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
  Oropetium_20150105_08542A  99 RGDFTADEQLLILDLHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 142
                                899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9274193IPR017930Myb domain
SMARTSM007172.9E-154595IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-2945140IPR009057Homeodomain-like
PfamPF002491.6E-164693IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2247100IPR009057Homeodomain-like
CDDcd001671.70E-114893No hitNo description
PROSITE profilePS5129423.16594148IPR017930Myb domain
SMARTSM007171.5E-1498146IPR001005SANT/Myb domain
PfamPF002495.1E-1599142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-23101146IPR009057Homeodomain-like
CDDcd001671.04E-10102142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVLQQHQQIS TGVASKTTRR PGPGSPPPPR KATXXXXXXX XXXXRRGPWT VDEDLILVNY  60
IAEHGDGRWN ALARAAGLKR TGKSCRLRWL NYLRPDVKRG DFTADEQLLI LDLHSRWGNR  120
WSKIAQQLPG RTDNEIKNYW RTRVQKHARQ LNCDVNSRQF RDAMTYLWMP RLAERAAASC  180
SHHSSQQQQH SAIAGGSCGD AHKSPCLSAL TTTTSPARGA DPAACLAANT NSYYQSPGGG  240
ASGSSSCVVP SSSSSDSSLT STESSSTAAV AAHEAEKNAH GHDDDICWAT TTQQGADLHE  300
FWTSAAAALP VEEPMSDVQD LTGWVQGFSD EGISFSSDAH SSSSLWSLDD IWRMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-24461464103MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-24461464103C-Myb DNA-Binding Domain
1msf_C5e-24461464103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08542A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284141e-121KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155473.11e-97transcription factor MYB108-like
SwissprotQ2QZJ81e-95JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLW5EEJ81e-96W5EEJ8_WHEAT; MYB transcription factor 82
STRINGPavir.Ha00303.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-75myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]