PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08512A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 174aa    MW: 18611.5 Da    PI: 11.4788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08512AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000715779123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               +kC  Cg++F +   L  H  +H
  Oropetium_20150105_08512A 57 FKCRTCGRRFATFQALGGHRTSH 79
                               89**********99998888777 PP
2zf-C2H217.61e-05106128123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C+ Cg++F++   L  H+r+H
  Oropetium_20150105_08512A 106 HRCQTCGMVFPTGQALGGHMRRH 128
                                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.3E-105681IPR007087Zinc finger, C2H2
SMARTSM003550.25779IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7835784IPR007087Zinc finger, C2H2
SuperFamilySSF576675.83E-857128No hitNo description
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
PfamPF139125.5E-12105129IPR007087Zinc finger, C2H2
SMARTSM003550.0082106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265106128IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MEDHRVPATS PPPMSSSMAP AAKNLLLLLS LSPSPASKVI VKQQTKNNKR VRLDGAFKCR  60
TCGRRFATFQ ALGGHRTSHK RPRVRAHGLD LLLGARPGKG AASNVHRCQT CGMVFPTGQA  120
LGGHMRRHRT AAFDAVPAMM TTTSLSGLSS LEEGDHDDAG DIVIPTRTLI HFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08512A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340451e-37AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK0624911e-37AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence.
GenBankAK1052261e-37AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence.
GenBankAP0149671e-37AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAY3058661e-37AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
GenBankCP0126191e-37CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankCT8333221e-37CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980041.15e-53zinc finger protein ZAT12
TrEMBLA0A368SBJ91e-51A0A368SBJ9_SETIT; Uncharacterized protein
STRINGPavir.Ha00194.1.p1e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-22C2H2 family protein